View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_high_36 (Length: 336)
Name: NF7017_high_36
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 45488903 - 45488589
Alignment:
| Q |
18 |
agtaagtgtgtatttgtgttaccgttgcaaagatgctgcacgagtgccaatactccgttctgtgaggtgcacgggcaggggcaaccatttataatataac |
117 |
Q |
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| T |
45488903 |
agtaagtgtgcatttgtgttaccgttgcaaagatgctgcacgagtgccaatactccgttctgtgaggtgcacgggcaggggcaaccatttataatataac |
45488804 |
T |
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| Q |
118 |
tttatattctaaaacggaaatacggacacaacagaagtatgactatattaacaaggtaagtggcataaaaatagaagtatagaagtagtgagtgggagaa |
217 |
Q |
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| T |
45488803 |
tttatattctaaaacagaaatacggacacaacagaagtatgactatattaacaaggtaagtggcataaaaatagaagtatagaagtagtgagtgggagaa |
45488704 |
T |
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| Q |
218 |
agtagctacacaatgcacaaaatgtgattagtggttcattaacaaggtaaggtaaaaaactatatgaaaaaatgaaattttgctgaattgtgttatt-tt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45488703 |
agtagctacacaatgcacaaaatgtgattagtggttcattaacaaggtaaggtaaaaaactatatgaaaaaatgaaattttgctgaattgtgttattttt |
45488604 |
T |
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| Q |
317 |
ttctttcttctcact |
331 |
Q |
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||||||||||||||| |
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| T |
45488603 |
ttctttcttctcact |
45488589 |
T |
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