View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7017_high_40 (Length: 322)
Name: NF7017_high_40
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 23270184 - 23270487
Alignment:
| Q |
1 |
ttttgatctgacgatcattgatatgctgattgcgtgcaatcacttgttgcttggaatctaaattcatgaatttctatgtcggttttctaatgtgtgcaat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23270184 |
ttttgatccgacgatcattgatatgctgattgcgtgcaatcacttgttgcttggaatctaaattcatgaatttctatgtcggttttctaatgtgtgcaat |
23270283 |
T |
|
| Q |
101 |
gtttggacacaatatgaatatttaattatatttcctnnnnnnnntaaaattaactactctctttttgttttagtaacccacatttttatttggtggaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23270284 |
gtttggacacaatatgaatatttaattatatttcctaaaaaaaataaaattaactactctctttttgttttagtaacccacatttttatttggtggaaag |
23270383 |
T |
|
| Q |
201 |
ataaaaatttcgcatgggaatgaatgttaaaggattatatatgatttgtgagaaacttttacattattatagattaatagttgaatatgatgggaagtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23270384 |
ataaaaatttcgcatgggaatgaatgttaaaggattatatatgatttgtgagaaacttttacattattatagattaatagttgaatatgatgggaagtgt |
23270483 |
T |
|
| Q |
301 |
attc |
304 |
Q |
| |
|
|||| |
|
|
| T |
23270484 |
attc |
23270487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 20143013 - 20142713
Alignment:
| Q |
1 |
ttttgatctgacgatcattgatatgctgattgcgtgcaatcacttgttgcttggaatctaaattcatgaatttctatgtcggttttctaatgtgtgcaat |
100 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20143013 |
ttttgatccgacgaccattgatatgttgattgcgtgcaatcacttgttgcttggaatctaaattcttgaatttctatgtcggttttctaatgtgtgcaat |
20142914 |
T |
|
| Q |
101 |
gtttggacacaatatgaatatttaattatatttcctnnnnnnnntaaaattaactactctctttttgttttagtaacccacatttttatttggtggaaag |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | |||||| ||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20142913 |
gtttggacacgatatgaatatttaattatatttcctaaaaaa---ataattaattactcacattttgttttagtaacccacatttttatttggtggaaag |
20142817 |
T |
|
| Q |
201 |
ataaaaatttcgcatgggaatgaatgttaaaggattatatatgatttgtgagaaacttttacattattatagattaatagttgaatatgatgggaagtgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20142816 |
ataaaaatttcgcatgggaatgaatgttaaaggattatatatgatttgtgagaaactattacattattatagattaatagttgaatatgatgggaagtgt |
20142717 |
T |
|
| Q |
301 |
attc |
304 |
Q |
| |
|
|||| |
|
|
| T |
20142716 |
attc |
20142713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 28982044 - 28981953
Alignment:
| Q |
47 |
ttgcttggaatctaaattcatgaatttctatgtcggttttctaatgtgtgcaatgtttggacacaatatgaata--tttaattatatttcct |
136 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
28982044 |
ttgcttggaattcaaattcatgaatttctatgtcggttttctaatgtgtgtaatgtttggacatgatatgaatatctctaattatatttcct |
28981953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University