View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7017_high_44 (Length: 305)
Name: NF7017_high_44
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_44 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 30020216 - 30020509
Alignment:
| Q |
1 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30020216 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaataattctcgtaaattagaatctaac |
30020315 |
T |
|
| Q |
101 |
tctctatttcaatagaaaaagttctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30020316 |
tctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
30020415 |
T |
|
| Q |
201 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30020416 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
30020509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 30103427 - 30103134
Alignment:
| Q |
1 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30103427 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggttaaatatttctcgtaaattagaatctaac |
30103328 |
T |
|
| Q |
101 |
tctctatttcaatagaaaaagttctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30103327 |
tctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
30103228 |
T |
|
| Q |
201 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30103227 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
30103134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 30121656 - 30121363
Alignment:
| Q |
1 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
30121656 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggttaaataattctcgtaaattagaatctaac |
30121557 |
T |
|
| Q |
101 |
tctctatttcaatagaaaaagttctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30121556 |
tctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
30121457 |
T |
|
| Q |
201 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30121456 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
30121363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 30234617 - 30234324
Alignment:
| Q |
1 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30234617 |
atcatttactattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
30234518 |
T |
|
| Q |
101 |
tctctatttcaatagaaaaagttctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
30234517 |
tctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggggtgaccatggatgttatcatgggagttattactaactttgctacta |
30234418 |
T |
|
| Q |
201 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
294 |
Q |
| |
|
||| ||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30234417 |
aaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggcaaccttaccaggatgacaactgatgtcca |
30234324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 30040479 - 30040186
Alignment:
| Q |
1 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30040479 |
atcatttactattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaataattctcgtaaattagaatctaac |
30040380 |
T |
|
| Q |
101 |
tctctatttcaatagaaaaagttctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
30040379 |
tctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggggtgaccatggatgttatcatgggagttattactaactttgctacta |
30040280 |
T |
|
| Q |
201 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
294 |
Q |
| |
|
||| ||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30040279 |
aaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggcaaccttaccaggatgacaactgatgtcca |
30040186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 30109957 - 30109664
Alignment:
| Q |
1 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30109957 |
atcatttactattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaataattctcgtaaattagaatctaac |
30109858 |
T |
|
| Q |
101 |
tctctatttcaatagaaaaagttctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
30109857 |
tctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggggtgaccatggatgttatcatgggagttattactaactttgctacta |
30109758 |
T |
|
| Q |
201 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
294 |
Q |
| |
|
||| ||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30109757 |
aaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggcaaccttaccaggatgacaactgatgtcca |
30109664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 30078634 - 30078915
Alignment:
| Q |
1 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30078634 |
atcatttaatattgtcttcatttctatgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
30078733 |
T |
|
| Q |
101 |
tctctatttcaatagaaaaagttctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30078734 |
tctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattattaactttgctacta |
30078833 |
T |
|
| Q |
201 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
294 |
Q |
| |
|
| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30078834 |
agactgctgaatttacggttaaagctattggtcgtcaatttg------------attacaagggcaaccttaccaagatgacaactgatgtcca |
30078915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 30136661 - 30136380
Alignment:
| Q |
1 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30136661 |
atcatttaatattgtcttcatttctgtgctttcatttttctctgtttattcatgtgctgttataaagtggtaaaatatttctcgtaaattagaatctaac |
30136562 |
T |
|
| Q |
101 |
tctctatttcaatagaaaaagttctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattaataactttgctacta |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30136561 |
tctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttattattaactttgctacta |
30136462 |
T |
|
| Q |
201 |
aaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
294 |
Q |
| |
|
||| |||||||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30136461 |
aaactgctgaatttacggttgaagctattcgtcgtcaatttg------------attacaagggcaaccttaccaagatgacaactgatgtcca |
30136380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 294
Target Start/End: Original strand, 30009128 - 30009230
Alignment:
| Q |
192 |
ttgctactaaaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgt |
291 |
Q |
| |
|
||||| |||||| ||||||| ||| ||| | ||||||| ||||||||| ||||||||||||| ||||||| | |||||| ||||||| ||||||||| |
|
|
| T |
30009128 |
ttgctgctaaaattgctgaaattatggttgcacctattggacgtcaatttcgttacatactctactacaaggactaccttaaaaagatgaaaactgatgt |
30009227 |
T |
|
| Q |
292 |
cca |
294 |
Q |
| |
|
||| |
|
|
| T |
30009228 |
cca |
30009230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 30187316 - 30187270
Alignment:
| Q |
225 |
ctattggtcgtcaatttggttacatactctattacaagggcaacctt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30187316 |
ctattggtcgtcaatttggttacatactctactacaaggacaacctt |
30187270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 30787720 - 30787766
Alignment:
| Q |
225 |
ctattggtcgtcaatttggttacatactctattacaagggcaacctt |
271 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30787720 |
ctattggacgtcaatttggttacatactctactacaagggcaacctt |
30787766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 30065658 - 30065727
Alignment:
| Q |
225 |
ctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtcca |
294 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||||||| | |||||| ||||||| |||||||||||| |
|
|
| T |
30065658 |
ctattggacgtcaatttcgttacatactctactacaaggactaccttaaaaagatgaaaactgatgtcca |
30065727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 30168645 - 30168691
Alignment:
| Q |
225 |
ctattggtcgtcaatttggttacatactctattacaagggcaacctt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
30168645 |
ctattggtcgtcaatttggttacatactctactacaagcgaaacctt |
30168691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 30249370 - 30249416
Alignment:
| Q |
225 |
ctattggtcgtcaatttggttacatactctattacaagggcaacctt |
271 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
30249370 |
ctattggacgtcaatttggttacatactctactacaagagaaacctt |
30249416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 30276943 - 30277016
Alignment:
| Q |
198 |
ctaaaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaacctt |
271 |
Q |
| |
|
|||||| | |||||||||| ||| | ||||||| | ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
30276943 |
ctaaaatttctgaatttacggttgcacctattggacaacaatttggttacataatatattacaagggcaacctt |
30277016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University