View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7017_high_46 (Length: 302)

Name: NF7017_high_46
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7017_high_46
NF7017_high_46
[»] chr2 (2 HSPs)
chr2 (19-298)||(38252235-38252514)
chr2 (19-298)||(43157028-43157307)
[»] chr6 (3 HSPs)
chr6 (19-298)||(10123626-10123926)
chr6 (19-164)||(19307054-19307199)
chr6 (195-298)||(19307274-19307376)
[»] chr1 (5 HSPs)
chr1 (60-298)||(11474352-11474590)
chr1 (19-298)||(28245399-28245699)
chr1 (205-298)||(50019096-50019188)
chr1 (19-59)||(11474691-11474731)
chr1 (19-59)||(11502731-11502771)
[»] chr5 (2 HSPs)
chr5 (19-162)||(25382644-25382787)
chr5 (213-298)||(25382466-25382550)
[»] chr7 (1 HSPs)
chr7 (19-164)||(22490639-22490784)
[»] chr4 (2 HSPs)
chr4 (21-118)||(48794515-48794612)
chr4 (259-297)||(48794296-48794334)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 38252235 - 38252514
Alignment:
Q  19 gtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38252235 gtgtggctgcacaatcctaagacagcacactaacaggatccaaaataacattactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 38252334  T
Q  119 cgcgcctgaacagcaaaaaacaacatgcaaaccggaa-ccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccc 217  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38252335 cgcgcctgaacagcaaaaaactacatgcaaaccggaacccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccc 38252434  T
Q  218 tatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcaacacgatact 298  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||    
T  38252435 tatgcattcattccattcaaataggttgg-cccccctatttcctacattaataacaacttaaaaattagcatcacgatact 38252514  T

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Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 43157307 - 43157028
Alignment:
Q  19 gtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157307 gtgtggctgcacaatcctaagacagcacactaacaggatccaaaataacattactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 43157208  T
Q  119 cgcgcctgaacagcaaaaaacaacatgcaaaccggaacc-ccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccc 217  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157207 cgcgcctgaacagcaaaaaactacatgcaaaccggaacccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccc 43157108  T
Q  218 tatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcaacacgatact 298  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||    
T  43157107 tatgcattcattccattcaaataggttgg-cccccctatttcctacattaataacaacttaaaaattagcatcacgatact 43157028  T

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Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 10123626 - 10123926
Alignment:
Q  19 gtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10123626 gtgtggctgcacaatcctaagacagcacactaacaggatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 10123725  T
Q  119 cgcgcctgaacagcaaaaaacaacatgcaaac----------------------cggaaccccccaggtatcaaaccagaaaacttaataacaacaaaaa 196  Q
    ||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||    
T  10123726 cgcgcctgaacagcaaaaaacaacatgcaaaccggaacccccaggcacctgcagcggaaccccccaggtatcaaaccagaaaacttaataacaacaaaaa 10123825  T
Q  197 tgcagcaacgccagtgccccctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcaacacgata 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||    
T  10123826 tgcagcaacgccagtgccccctatgcattcattccattcaaataggttgg-cccccctatttcctacattaataacaacttaaaaattagcatcacgata 10123924  T
Q  297 ct 298  Q
    ||    
T  10123925 ct 10123926  T

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Target: chr6; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 19307054 - 19307199
Alignment:
Q  19 gtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19307054 gtgtggctgcacaatcctaagacagcacactaacaggatccaaaataacactactaagtgattttaacagcaaaaacacagttcccatgctccaaaaaac 19307153  T
Q  119 cgcgcctgaacagcaaaaaacaacatgcaaaccggaaccccccagg 164  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  19307154 cgcgcctgaacagcaaaaaacaacatgcaaactggaaccccccagg 19307199  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 19307274 - 19307376
Alignment:
Q  195 aatgcagcaacgccagtgccccctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcaacacga 294  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||    
T  19307274 aatgcagcaacgccagtgccccctatgaattcattccattcaaataggttgg-cccctctatttcctacattaataacaacttaaaaattagcatcacga 19307372  T
Q  295 tact 298  Q
    ||||    
T  19307373 tact 19307376  T

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Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 60 - 298
Target Start/End: Complemental strand, 11474590 - 11474352
Alignment:
Q  60 aaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaacaacatgcaaaccggaacc-c 158  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  11474590 aaaataacattactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaactacatgcaaaccggaacccc 11474491  T
Q  159 cccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccctatgcattcattccattcaaataggttggnnnnnnntattt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  11474490 cccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccctatgcattcattccattcaaataggttgg-cccccctattt 11474392  T
Q  259 cctacattaataacaacttaaaaattagcaacacgatact 298  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  11474391 cctacattaataacaacttaaaaattagcatcacgatact 11474352  T

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Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 28245399 - 28245699
Alignment:
Q  19 gtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245399 gtgtggctgcacaatcctaagacagcacactaacaggatccaaaataacattactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 28245498  T
Q  119 cgcgcctgaacagcaaaaaacaacatgcaaac----------------------cggaaccccccaggtatcaaaccagaaaacttaataacaacaaaaa 196  Q
    ||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||    
T  28245499 cgcgcctgaacagcaaaaaacaacatgcaaacgggaacccccaggcacctgcagcggaaccccccaggtatcaaaccagaaaacttaataacaacaaaaa 28245598  T
Q  197 tgcagcaacgccagtgccccctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcaacacgata 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||    
T  28245599 tgcagcaacgccagtgccccctatgcattcattccattcaaataggttgg-cccctctatttcctacattaataacaacttaaaaattagcatcacgata 28245697  T
Q  297 ct 298  Q
    ||    
T  28245698 ct 28245699  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 50019096 - 50019188
Alignment:
Q  205 cgccagtgccccctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcaacacgatact 298  Q
    |||| ||||||||||||||||||||||||||||||||| |||       |||| |||||||||||||||||||||||||||| | |||||||||    
T  50019096 cgcccgtgccccctatgcattcattccattcaaataggctgg-cctccctattgcctacattaataacaacttaaaaattagaatcacgatact 50019188  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 11474731 - 11474691
Alignment:
Q  19 gtgtggctgcacaatcctaagacagcacactaacaagatcc 59  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11474731 gtgtggctgcacaatcctaagacagcacactaacaggatcc 11474691  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 11502771 - 11502731
Alignment:
Q  19 gtgtggctgcacaatcctaagacagcacactaacaagatcc 59  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11502771 gtgtggctgcacaatcctaagacagcacactaacaggatcc 11502731  T

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Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 25382787 - 25382644
Alignment:
Q  19 gtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 118  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25382787 gtgtggctgcacaatcctaagacagcacactaacaggagccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctctaaaaaac 25382688  T
Q  119 cgcgcctgaacagcaaaaaacaacatgcaaaccggaacccccca 162  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  25382687 cgcgcctgaacagcaaaaaacaacctgcaaaccgaaacccccca 25382644  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 25382550 - 25382466
Alignment:
Q  213 ccccctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcaacacgatact 298  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||    
T  25382550 ccccctatgcattcattccattcaaataggttggcccccc-tatttcctacattaataacaacttaaaaattagcatcacgatact 25382466  T

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Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 22490639 - 22490784
Alignment:
Q  19 gtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 118  Q
    |||||||||||||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22490639 gtgtggctgcacaatcctaagacatcacactaacagcagccaaaataacactactaagtggttttaacagcaaaaacacagttcctatgctccaaaaaac 22490738  T
Q  119 cgcgcctgaacagcaaaaaacaacatgcaaaccggaaccccccagg 164  Q
    |||||||||||||||||||||||  |||||||||||||||||||||    
T  22490739 cgcgcctgaacagcaaaaaacaaactgcaaaccggaaccccccagg 22490784  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 48794612 - 48794515
Alignment:
Q  21 gtggctgcacaatcctaagacagcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac 118  Q
    ||||||||||||||||||||||||||| |||||  | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48794612 gtggctgcacaatcctaagacagcacattaacagaagccaaaataacactactaagtggttttaatagcaaaaacacagttcccatgctccaaaaaac 48794515  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 48794334 - 48794296
Alignment:
Q  259 cctacattaataacaacttaaaaattagcaacacgatac 297  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  48794334 cctacattaataacaacttaaaaattagcatcacgatac 48794296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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