View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_high_47 (Length: 301)
Name: NF7017_high_47
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 27 - 286
Target Start/End: Complemental strand, 11812136 - 11811877
Alignment:
| Q |
27 |
actaaaaaggaataacccccaaagaaaaaccagccaatctagccagacttcgagaccttgctgacgtcattgttcctataaacagtttactcttatcgaa |
126 |
Q |
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| T |
11812136 |
actaaaaaggaataacccccaaagaaaaaccagccaatctagccagacttcgagaccttgctgatgtcattgttcctataaacagtttactcttgtcgaa |
11812037 |
T |
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| Q |
127 |
attcaccaacttcccggaaacctcagaataacaattgaacacccgcaaaaggcaccgaatatttttgcgagtactgcacaacaaataaaaatatcttctg |
226 |
Q |
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| T |
11812036 |
attcaccaactgcccggaaacctcagaataacaattgaacacccgcaaaaggcaccgaatatttttgcgagtactgcacaacaaataaaaatatcatctg |
11811937 |
T |
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| Q |
227 |
cataaagaatatgtgttggtaaagagatacccctacaatacggcataggctgcagagcac |
286 |
Q |
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| T |
11811936 |
cataaagaatatgtgttggtaaagagatacccctacaatacggcataggctgcagagcac |
11811877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 32 - 286
Target Start/End: Complemental strand, 20494469 - 20494214
Alignment:
| Q |
32 |
aaaggaataacccccaaagaaaaaccagccaatctagccagacttcgagaccttgctgacgtcattgttcctataaacagtttactcttatcgaaattca |
131 |
Q |
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||||||||||| |||||||| ||||||| |||||||||||| | ||||| || | || ||||| | ||| |||||| ||| || || || ||||||| |
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| T |
20494469 |
aaaggaataactcccaaagacaaaccagataatctagccagattacgagatctagtagatgtcatagcgcctgtaaacaattttcttttttcaaaattca |
20494370 |
T |
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| Q |
132 |
ccaacttcccggaaacctcagaataacaattgaacacccgcaaaaggcaccgaatatttttgcgagta-ctgcacaacaaataaaaatatcttctgcata |
230 |
Q |
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|||||| || || ||||| |||||| |||| |||||||||||||| |||| ||| |||||||||||| | |||||||||||||||||||| || ||||| |
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| T |
20494369 |
ccaactgaccagagacctctgaataagaattaaacacccgcaaaagacacctaatgtttttgcgagtacccgcacaacaaataaaaatatcatcagcata |
20494270 |
T |
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| Q |
231 |
aagaatatgtgttggtaaagagatacccctacaatacggcataggctgcagagcac |
286 |
Q |
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|||||| |||||| |||| | ||| ||| ||||| |||||||||| || ||||| |
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| T |
20494269 |
aagaatgtgtgttcgtaagaacatattcctgcaataaggcataggctacaaagcac |
20494214 |
T |
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