View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7017_high_6 (Length: 566)

Name: NF7017_high_6
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7017_high_6
NF7017_high_6
[»] chr8 (3 HSPs)
chr8 (7-118)||(31372202-31372312)
chr8 (5-116)||(11659323-11659434)
chr8 (9-115)||(11668493-11668599)
[»] chr7 (4 HSPs)
chr7 (5-127)||(32248983-32249105)
chr7 (5-116)||(33426452-33426563)
chr7 (6-127)||(47815551-47815672)
chr7 (5-93)||(37504383-37504471)
[»] chr1 (4 HSPs)
chr1 (5-127)||(28851104-28851226)
chr1 (5-127)||(2170120-2170241)
chr1 (5-109)||(39482758-39482862)
chr1 (35-99)||(6844049-6844114)
[»] chr6 (1 HSPs)
chr6 (5-115)||(10460836-10460946)
[»] chr4 (1 HSPs)
chr4 (57-127)||(53239111-53239181)
[»] chr2 (1 HSPs)
chr2 (5-99)||(4867952-4868046)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 31372202 - 31372312
Alignment:
Q  7 tttggtgttgctaattctataaatcctatcaaacttacttgtttcatctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatat 106  Q
    ||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31372202 tttggtggtgctaattctataa-tcctatcaaacttacttgttccatctgttaaaaaactattggccattttagtttgaagtattggtacatacaaatat 31372300  T
Q  107 atgagtgtacgg 118  Q
    ||||||||||||    
T  31372301 atgagtgtacgg 31372312  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 11659434 - 11659323
Alignment:
Q  5 agtttggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaa 103  Q
    ||||||||| |||||||||||||| |||  ||| ||||||||||| ||| |||||||||| ||||||  ||||||| |||||||||||||||||||||||    
T  11659434 agtttggtggtgctaattctataa-tccagtcatacttacttgttccatgctgtcaaaaatctattgaccattttaatttggagtattggtacatacaaa 11659336  T
Q  104 tatatgagtgtac 116  Q
    |||||||||||||    
T  11659335 tatatgagtgtac 11659323  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 11668599 - 11668493
Alignment:
Q  9 tggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatata 107  Q
    ||||| |||||||||||||| |||  ||| |||||||||||  || |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  11668599 tggtggtgctaattctataa-tccagtcatacttacttgttctatgctgtcaaaaatctattggccattttaatttggagtattggtacatacaaatata 11668501  T
Q  108 tgagtgta 115  Q
    || |||||    
T  11668500 tgggtgta 11668493  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 32248983 - 32249105
Alignment:
Q  5 agtttggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaa 103  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||||||||    
T  32248983 agtttggtggtgctaattctataa-tccagtcaaacttacttgttccatgctatcaaaaaactattggtcattttaatttggagtattggtacatacaaa 32249081  T
Q  104 tatatgagtgtacggcggaaggag 127  Q
    |||||| ||||||||  |||||||    
T  32249082 tatatgggtgtacggtagaaggag 32249105  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 33426563 - 33426452
Alignment:
Q  5 agtttggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaa 103  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  33426563 agtttggtggtgctaattctataa-tccaatcaaacttacttgttccatgctgtcaaaaaactattgaccattttagtttggagtattgatacatacaaa 33426465  T
Q  104 tatatgagtgtac 116  Q
    |||||| ||||||    
T  33426464 tatatgggtgtac 33426452  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 47815551 - 47815672
Alignment:
Q  6 gtttggtgttgctaattctataaatcctatcaaacttacttgtttcatct-gtcaaaaaactattggtcattttagtttggagtattggtacatacaaat 104  Q
    |||||||| |||||||||||||| ||   ||||||||| ||||| ||| | |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  47815551 gtttggtggtgctaattctataattcag-tcaaacttatttgttccatgttgtcaaaaaactattggccattttagtttggagtattgttacatacaaat 47815649  T
Q  105 atatgagtgtacggcggaaggag 127  Q
    ||||| ||||||||  |||||||    
T  47815650 atatgggtgtacggtagaaggag 47815672  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 37504383 - 37504471
Alignment:
Q  5 agtttggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattgg 93  Q
    ||||||||| |||||||||||||| ||   ||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||    
T  37504383 agtttggtggtgctaattctataa-tctactcaaacttacttgttccatgctgtcaaaaaactattcgtcattttaatttggagtattgg 37504471  T

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Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 28851226 - 28851104
Alignment:
Q  5 agtttggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaa 103  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||| ||| |||||||||||||||||| ||||||||| | |||||||||||||||||||    
T  28851226 agtttggtggtgctaattctataa-tccagtcaaacttacttgttccatgctgtcaaaaaactattggccattttagtctagagtattggtacatacaaa 28851128  T
Q  104 tatatgagtgtacggcggaaggag 127  Q
    |||||| ||||||||  |||||||    
T  28851127 tatatgggtgtacggaagaaggag 28851104  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 2170241 - 2170120
Alignment:
Q  5 agtttggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaa 103  Q
    ||||||||| |||||||||||||| ||   ||||||||||||||| ||| |||||||||| ||||||  |||||||||| ||||||||||||||||||||    
T  2170241 agtttggtggtgctaattctataattcag-tcaaacttacttgttgcatgctgtcaaaaa-ctattgaccattttagttaggagtattggtacatacaaa 2170144  T
Q  104 tatatgagtgtacggcggaaggag 127  Q
    |||||| ||||||||  |||||||    
T  2170143 tatatgggtgtacggtagaaggag 2170120  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 39482758 - 39482862
Alignment:
Q  5 agtttggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaa 103  Q
    |||||| || |||||||||||||| ||   ||||||||||||||||||| |||||||||||||||||  ||||||| |||| ||||||| || |||||||    
T  39482758 agtttgatggtgctaattctataa-tcgagtcaaacttacttgtttcatgctgtcaaaaaactattgaccattttaatttgaagtattgatatatacaaa 39482856  T
Q  104 tatatg 109  Q
    | ||||    
T  39482857 tgtatg 39482862  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 6844049 - 6844114
Alignment:
Q  35 tcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacata 99  Q
    ||||||||||||||| ||| |||||| |||||||||||||| ||| ||||||||||| | ||||||    
T  6844049 tcaaacttacttgttccatgctgtcagaaaactattggtcactttggtttggagtatcgatacata 6844114  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 10460946 - 10460836
Alignment:
Q  5 agtttggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaa 103  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  10460946 agtttggtggtgctaattctataa-tccagtcaaacttacttgttccatgctgtcaaaaaactattggccattttagtttggaatattgatacatacaaa 10460848  T
Q  104 tatatgagtgta 115  Q
    |||||| |||||    
T  10460847 tatatgggtgta 10460836  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 53239181 - 53239111
Alignment:
Q  57 tcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgtacggcggaaggag 127  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  53239181 tcaaaaaactattgaccattttagtttggagtattggtacatacaaatatatgggtgtacggtagaaggag 53239111  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 4867952 - 4868046
Alignment:
Q  5 agtttggtgttgctaattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacata 99  Q
    ||||||||| |||||| |||| || |||  ||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||| ||||||||    
T  4867952 agtttggtggtgctaaatctacaa-tccagtcaaacttacttgttccatactgtcagaaaactattggtcattttggtttggagtatcggtacata 4868046  T

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