View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_high_7 (Length: 563)
Name: NF7017_high_7
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 6413178 - 6412961
Alignment:
| Q |
1 |
aggacggttaagaaagaaaggagtagagggaaattacaatgaagagtgtgacacctattttttagtatattccagttcatattattatttaatttggggt |
100 |
Q |
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| T |
6413178 |
aggacggttaagaaagaaaggagtagagggaaattacaatgaagagtgtgacacctattttttagtatattccagttcatattattatttaatttggggt |
6413079 |
T |
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| Q |
101 |
tagtaagggaattttcttttggggaaatgaattaataatttttcttccaaattttggtatttactagatccgacgatatgataatagttcaaacccaaac |
200 |
Q |
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| T |
6413078 |
tagtaagggaattttcttttgggg-aatgaattaataatttttcttccaaattttggtatttactagatcggacgatatgataatggttcaaacccaaac |
6412980 |
T |
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| Q |
201 |
tcgtttattgaatgtgagt |
219 |
Q |
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| |||||| | |||||||| |
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| T |
6412979 |
ttgtttatcgtatgtgagt |
6412961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 423 - 545
Target Start/End: Complemental strand, 6412756 - 6412634
Alignment:
| Q |
423 |
agttcgaactcttctattcctcatggtgaagatgaatatacaattttctcctacattaagtggttattagtgggattggaattaacttaatcaacttacc |
522 |
Q |
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| T |
6412756 |
agttcgaactcttctattcctcatggtgaagatgaatacacaattttctcctacattaagtggttattagtgggattggaattaacttaatcaacttagc |
6412657 |
T |
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| Q |
523 |
gcaaggagtatatgctccaaagt |
545 |
Q |
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| T |
6412656 |
gcaaggagtatatgctccaaagt |
6412634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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