View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7017_high_79 (Length: 212)

Name: NF7017_high_79
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7017_high_79
NF7017_high_79
[»] chr2 (9 HSPs)
chr2 (1-196)||(30019652-30019847)
chr2 (1-200)||(30078179-30078378)
chr2 (1-196)||(30040848-30041043)
chr2 (1-196)||(30110326-30110521)
chr2 (1-196)||(30234986-30235181)
chr2 (37-200)||(30136958-30137121)
chr2 (37-173)||(30045941-30046077)
chr2 (40-86)||(39324796-39324842)
chr2 (41-86)||(42352251-42352296)
[»] chr8 (1 HSPs)
chr8 (40-100)||(3771638-3771698)
[»] chr5 (7 HSPs)
chr5 (30-115)||(41982520-41982605)
chr5 (40-86)||(4650341-4650387)
chr5 (40-81)||(38734692-38734733)
chr5 (40-86)||(2858210-2858256)
chr5 (40-81)||(2846389-2846430)
chr5 (67-112)||(29302550-29302595)
chr5 (52-112)||(3082689-3082748)
[»] chr6 (3 HSPs)
chr6 (30-80)||(33940956-33941006)
chr6 (46-123)||(2308372-2308448)
chr6 (40-86)||(27991927-27991973)
[»] chr1 (3 HSPs)
chr1 (29-115)||(8245431-8245517)
chr1 (40-115)||(42106999-42107074)
chr1 (40-102)||(1035397-1035458)
[»] chr7 (2 HSPs)
chr7 (34-100)||(38735907-38735973)
chr7 (29-82)||(31446665-31446718)
[»] chr4 (2 HSPs)
chr4 (40-86)||(34121090-34121136)
chr4 (29-86)||(38516122-38516179)
[»] chr3 (2 HSPs)
chr3 (39-115)||(25750837-25750914)
chr3 (50-143)||(49222430-49222523)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30019652 - 30019847
Alignment:
1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30019652 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 30019751  T
101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcattt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
30019752 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattt 30019847  T

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Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 30078179 - 30078378
Alignment:
1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30078179 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 30078278  T
101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagt 200  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30078279 gtatgtctaaaaattgtttaatttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagt 30078378  T

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Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 30041043 - 30040848
Alignment:
1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
30041043 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtga 30040944  T
101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcattt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
30040943 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattt 30040848  T

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Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 30110521 - 30110326
Alignment:
1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
30110521 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtga 30110422  T
101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcattt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
30110421 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattt 30110326  T

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Target: chr2; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 30235181 - 30234986
Alignment:
1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
30235181 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtga 30235082  T
101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcattt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
30235081 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattt 30234986  T

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Target: chr2; HSP #6
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 30137121 - 30136958
Alignment:
37 acttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30137121 acttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 30137022  T
137 tagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagt 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
30137021 tagaagacttacacttaataaactaatccataaatatcaatattattttagttttcatttcagt 30136958  T

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Target: chr2; HSP #7
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 30046077 - 30045941
Alignment:
37 acttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30046077 acttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 30045978  T
137 tagaagacttacacttaataaactaatccataaatat 173  Q
    |||||||||||||||||||||||||||||||||||||    
30045977 tagaagacttacacttaataaactaatccataaatat 30045941  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 39324842 - 39324796
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    |||||||| ||||||||||||||| |||||| |||||||||| ||||    
39324842 taaatgatattgattgatgtgatctaattatttttgttttaaatttt 39324796  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 42352251 - 42352296
Alignment:
41 aaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||    
42352251 aaatgttgttgattgatgtgattacattatttttgttttaattttt 42352296  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 3771638 - 3771698
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||||    
3771638 taaatgatgttgattgatgtgattatattatttttgttttaatttttttcatttaatgtga 3771698  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 41982520 - 41982605
Alignment:
30 agaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 115  Q
    ||||||||  ||||||||||||||||||| |||| |||||| |||||||||| |||| | |||| |||||||| || | |||||||    
41982520 agaaaaaaactaaatgatgttgattgatgggatctaattatttttgttttaaattttttcatttgatgtgagtgtgcccaaatatt 41982605  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 4650341 - 4650387
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||    
4650341 taaatgatgttgattgatgtgatctaattatttttgttttaaatttt 4650387  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 38734692 - 38734733
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaa 81  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
38734692 taaatgatgttgattgatgtgatctaattatttttgttttaa 38734733  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 2858210 - 2858256
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    |||||||||||||||||||||||| | |||| |||||||||| ||||    
2858210 taaatgatgttgattgatgtgatctatttatttttgttttaaatttt 2858256  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 2846389 - 2846430
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaa 81  Q
    ||||||||||||||||| |||||| |||||| ||||||||||    
2846389 taaatgatgttgattgaggtgatctaattatttttgttttaa 2846430  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 29302550 - 29302595
Alignment:
67 ttatctttgttttaatttttctaatttaatgtgagtatgtctaaat 112  Q
    |||| ||||||||||||||| |||||| ||||||||||| ||||||    
29302550 ttatttttgttttaatttttttaattttatgtgagtatgcctaaat 29302595  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 3082748 - 3082689
Alignment:
52 attgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaat 112  Q
    |||||| |||| ||||||| ||||||||||||||| | |||| |||||||| |||||||||    
3082748 attgatatgattaaattatttttgttttaattttt-tcattttatgtgagtgtgtctaaat 3082689  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 33940956 - 33941006
Alignment:
30 agaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgtttta 80  Q
    |||| ||| |||||||||||||||||||||||| ||||||| |||||||||    
33940956 agaataaaattaaatgatgttgattgatgtgattaaattatttttgtttta 33941006  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 2308372 - 2308448
Alignment:
46 atgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattt 123  Q
    ||||||||||||||||| | ||||| ||||||||||||||| | |||| |||||||| || | ||||||| |||||||    
2308372 atgttgattgatgtgattatattatttttgttttaattttt-tgatttgatgtgagtgtgcccaaatattttttattt 2308448  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 27991927 - 27991973
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    |||| |||||||||||||||||| | ||||| |||||||||||||||    
27991927 taaaagatgttgattgatgtgattatattatttttgttttaattttt 27991973  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 8245431 - 8245517
Alignment:
29 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 115  Q
    ||||| ||| ||||||||||||||||||||||||  |||||| ||||||| || ||||   |||| |||||||| | ||||||||||    
8245431 gagaataaaattaaatgatgttgattgatgtgatttaattatttttgtttaaaatttttccatttgatgtgagtgtttctaaatatt 8245517  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 42107074 - 42106999
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 115  Q
    ||||||||||| |||||||||||  |||||| |||||||||| ||||   |||| |||||||| |||| |||||||    
42107074 taaatgatgttaattgatgtgatttaattatttttgttttaaatttttccatttgatgtgagtgtgtccaaatatt 42106999  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 1035458 - 1035397
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagt 102  Q
    |||||||| | |||| |||||||| |||||| ||||||||||||||| | |||||||||||||    
1035458 taaatgatatagattaatgtgatctaattatttttgttttaattttt-ttatttaatgtgagt 1035397  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 38735907 - 38735973
Alignment:
34 aaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    |||| ||||||||||||||||||||||||  |||||| |||| ||||| |||| | |||| ||||||    
38735907 aaaaattaaatgatgttgattgatgtgatttaattatttttgctttaaattttttcatttgatgtga 38735973  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 31446665 - 31446718
Alignment:
29 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaat 82  Q
    ||||| ||| ||||||||||||||||||| |||  ||||||| |||||||||||    
31446665 gagaataaaattaaatgatgttgattgatatgaataaattatttttgttttaat 31446718  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 34121136 - 34121090
Alignment:
40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    ||||||||||||||||||||||| | ||||| |||||||||| ||||    
34121136 taaatgatgttgattgatgtgattatattatttttgttttaactttt 34121090  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 38516122 - 38516179
Alignment:
29 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    ||||| ||| ||||||||||||||||||||||||  |||||  |||||||| ||||||    
38516122 gagaataaaattaaatgatgttgattgatgtgatttaattaattttgtttttattttt 38516179  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 25750914 - 25750837
Alignment:
39 ttaaatgatgttgattgatgtgatcaaatta-tctttgtttt-aatttttctaatttaatgtgagtatgtctaaatatt 115  Q
    ||||||||||||||||||||| ||  ||||| | |||||||| ||||||||| |||| |||||||| ||||||||||||    
25750914 ttaaatgatgttgattgatgtaatttaattattttttgttttaaatttttct-atttgatgtgagtgtgtctaaatatt 25750837  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 49222430 - 49222523
Alignment:
50 tgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgattatagaaga 143  Q
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49222430 tgattgatgtgattaaactatttttattttaatatttttcatttgatgtgagtgtatttaaacattttttatttaaagttgtgattataaaaga 49222523  T

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