View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_high_8 (Length: 556)
Name: NF7017_high_8
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 340 - 551
Target Start/End: Complemental strand, 31645168 - 31644957
Alignment:
| Q |
340 |
ccacctgttcaccatatagcaaggttctgtataatgtaattattctcnnnnnnnnnnnnnnnnnaggaaataaatgtaaatattcttagttgcattgtgt |
439 |
Q |
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| T |
31645168 |
ccacctgttcaccatatagcaaggttctgtataatgtaattattctctttttttatttttttttaggaaataaatgtaaatattcttagttgcattgtgt |
31645069 |
T |
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| Q |
440 |
gtatccaagtctcattcttggctctcaaaaagtagctatcaggagtaataaatacacacatagccatattttgaatcaaacaaaaacaatagaatatcgt |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31645068 |
gtatccaagtctcattcttggctctcaaaaagtagctatcaggagtaataaatacacacatagccatattttgaatcaaacaaaaacaatagaatatcgt |
31644969 |
T |
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| Q |
540 |
atctctgctact |
551 |
Q |
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|||| ||||||| |
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| T |
31644968 |
atctttgctact |
31644957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 340
Target Start/End: Complemental strand, 31645212 - 31645183
Alignment:
| Q |
311 |
acctcaaagtgaatgatgcctttctctatc |
340 |
Q |
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| T |
31645212 |
acctcaaagtgaatgatgcctttctctatc |
31645183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 50637601 - 50637535
Alignment:
| Q |
86 |
tttttaagtttgagtctaactttttgaaagcttaatatgacatgtttgtctatttaaaaacatattt |
152 |
Q |
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| T |
50637601 |
tttttaggtttgagtttagccttttgaaagcttgattaggcatgtttgtctgtttaaaaacatattt |
50637535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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