View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_1 (Length: 817)
Name: NF7017_low_1
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 19 - 806
Target Start/End: Original strand, 12365490 - 12366296
Alignment:
| Q |
19 |
aaactattgatgattatcctccaagcttaaaggttaccaaagacttaatggattatatcagttttattaatctccaagacagagaaaagactcaaattga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
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| T |
12365490 |
aaactattgatgattatcctccaagcttaaaggttaccaaagacttaatggattatatcaattttactaatctccatcacagagaaaagactcaaattga |
12365589 |
T |
|
| Q |
119 |
tactatttgtataagtcatgggaatcttccaccgcaattcaaatcagtcaatcctcaagaatttggggaaagctccagataggcatctcaaccagaacaa |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |
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| T |
12365590 |
tactacatgtataagtcatgggaatcttccaccgcaattcaaaccagtcaatcctcaagaaattggggaaagctctagacaggcatctcaaccagaacaa |
12365689 |
T |
|
| Q |
219 |
gaattttaggaaaatattgaacaatagttcacacaaatgaattttgaagaaaatctaatggatattgagccttccgagaatcttgatgaagagaccgtaa |
318 |
Q |
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|| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| ||| |
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| T |
12365690 |
gactttcaggaaaatattgaacaacagttcacacaaatgaattttgaagaaaatccaacggatattgagcctttagagaatcttgatgaagagaccataa |
12365789 |
T |
|
| Q |
319 |
agtaactaataggggacagctggcagtatgagtcacgccagtctaggagctacttcttagagaactgctactactcttcgtctgatccaaacccgtcctc |
418 |
Q |
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|| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| | |
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| T |
12365790 |
agcaactaatagcggacagctggcagtatgagtcatgccagtctaggagctacttctcagaggactgctactactcttcgtctgatccaaacatgtcccc |
12365889 |
T |
|
| Q |
419 |
aagtcacgagcctatcttcaaagactaatatgtcatataagagtccaataagtcatttccaagatggcataggtgtcaaaaacgtgtcttgcataatagc |
518 |
Q |
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| T |
12365890 |
aagtcacgagtctatcttcaaagactaatatgtcatataagagtccaataagtcatttccaagatggcatgtgtgtcaataacgtgtcttgcataatagc |
12365989 |
T |
|
| Q |
519 |
aatgtgcatgaatagttatgtttttgtttttactactaagtgtgaaaaataatgtgatattttggtcaaaagtgtcataaaagtgttttcc--------a |
610 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| | |
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| T |
12365990 |
aatgtgcatgaatagttatatttttgtttttactactaagtgtgcaaaataatgtgacattttggtcaaaagtgtcataacagtgttttccattataaaa |
12366089 |
T |
|
| Q |
611 |
ttattataatgcatgcgaatagtgttttagtggcatgtgagtgaatagttttatttttgtacttaatgtatctccttggctataaaaggagaagagttgt |
710 |
Q |
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| T |
12366090 |
ttattataatgcatgtcaatagtgttttagt-gcatgtgagtgaatagttttatttttgtccttaatgtatctccttggctataaaaggagaagagttgt |
12366188 |
T |
|
| Q |
711 |
aacatattt------------atgaaattagtccaagtgtgttttatgaaaaacgtgttcttctaaatttctctcttctatctgagagctctaagttatt |
798 |
Q |
| |
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||||||||| ||||||| | ||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||| |
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| T |
12366189 |
aacatatttcacacaacttgaatgaaataaatcctagtgtgttttatgaaaaacatgttcttctaactttctctcttctttctgaaagctctaagttatt |
12366288 |
T |
|
| Q |
799 |
atgttcat |
806 |
Q |
| |
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|||||||| |
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| T |
12366289 |
atgttcat |
12366296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 484 - 806
Target Start/End: Complemental strand, 19965782 - 19965446
Alignment:
| Q |
484 |
ggcataggtgtcaaaaacgtgtcttgcataatagcaatgtgcatgaatagttatgtttttgtttttactactaagtgtgaaaaataatgtgatattttgg |
583 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || | || ||||| | | |||||||||| || |||||||| |||||||||||| ||||| | |
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| T |
19965782 |
ggcataggtgtcaaaaacgtgtcttgcataatagcaatatgtacgattagttgtatatttgtttttagtattaagtgtgcaaaataatgtgacattttag |
19965683 |
T |
|
| Q |
584 |
tcaaaagtgtcataaaagtgttttccattattataatgcatgcgaatagtgtttt-agtggcatgtgagtgaatagttttatttttgtacttaatgtatc |
682 |
Q |
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||||||||||||||||| ||| |||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||| ||| ||||| ||| |||| | |
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| T |
19965682 |
tcaaaagtgtcataaaaatgtcttccatagttataatgcatgccaatagtgttttcagtggcatgcgagtgaatagttctatctttgtctttagtgtacc |
19965583 |
T |
|
| Q |
683 |
tccttggctataaaaggagaagagttgtaacatattt------------atgaaat-tagtccaagtgtgttttatgaaaaacgtgttcttctaaatttc |
769 |
Q |
| |
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|| |||||||||||||||||||| ||||||||| ||| || |||| | ||| ||||||||| | ||||||| |||||||||||||||| |
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| T |
19965582 |
tcattggctataaaaggagaagaattgtaacatctttctcacaacttgaatcaaataaaatcctagtgtgtttcaagaaaaacatgttcttctaaatttc |
19965483 |
T |
|
| Q |
770 |
tctcttctatctgagagctctaagttattatgttcat |
806 |
Q |
| |
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|||||| | ||||| ||||||||||||||||| |||| |
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| T |
19965482 |
tctcttatttctgaaagctctaagttattatgatcat |
19965446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 564 - 717
Target Start/End: Original strand, 657851 - 658005
Alignment:
| Q |
564 |
aaaataatgtgatattttggtcaaaagtgtcataaaagtgttttccattattataatgcatgcgaatagtgttt-tagtggcatgtgagtgaatagtttt |
662 |
Q |
| |
|
|||||||||||| || || |||||||||||||||| ||| |||||| ||| ||| || | |||| ||||| ||||| |||||| ||| |||||| | |
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| T |
657851 |
aaaataatgtgacatgttagtcaaaagtgtcataagtatgtcttccataattgtaaagcttttcaataatgtttatagtgacatgtgtgtggatagttgt |
657950 |
T |
|
| Q |
663 |
atttttgtacttaatgtatctccttggctataaaaggagaagagttgtaacatat |
717 |
Q |
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| ||| | ||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
657951 |
gtctttatctttagtgtatctcattggctataaaaggagaagagttgtaacatat |
658005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 555 - 622
Target Start/End: Original strand, 6455808 - 6455875
Alignment:
| Q |
555 |
taagtgtgaaaaataatgtgatattttggtcaaaagtgtcataaaagtgttttccattattataatgc |
622 |
Q |
| |
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||||| || |||||||||||| ||||| ||||||||||| |||||| ||| |||||| |||||||||| |
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| T |
6455808 |
taagtatgcaaaataatgtgacattttagtcaaaagtgttataaaaatgtcttccataattataatgc |
6455875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 486 - 534
Target Start/End: Original strand, 6455599 - 6455647
Alignment:
| Q |
486 |
cataggtgtcaaaaacgtgtcttgcataatagcaatgtgcatgaatagt |
534 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||| || |||||| |
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| T |
6455599 |
cataggtgtcaaaaacgtgtctttcataataacaatgtgtataaatagt |
6455647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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