View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_10 (Length: 523)
Name: NF7017_low_10
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 514
Target Start/End: Complemental strand, 24809645 - 24809145
Alignment:
| Q |
13 |
tcatcactttgttacaaactataggtaatgcctctctctccctccctcttgaccatagcagacctacgaagcacaaacacagacaccaa-acac-gacat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| | || | ||||| |
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| T |
24809645 |
tcattactttgttacaaactataggtaatgcctctctctccctccctcttgaccatagcatacctatgaagaacaaacacggacactgatacgccgacat |
24809546 |
T |
|
| Q |
111 |
ggatactgataatttgagaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagata |
210 |
Q |
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| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809545 |
cgcta---ataatttgaaaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagata |
24809449 |
T |
|
| Q |
211 |
ggatgtccttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcacca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809448 |
ggatgtccttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcacca |
24809349 |
T |
|
| Q |
311 |
tgttcatctcaactannnnnnnagtcactgttgttttctctgactacatgtttttgctgagatactctctcagttgttgtccacaacaattatgtatgtg |
410 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809348 |
tgttcatctcaactatttttttagtcactgttgttttctctgactacatgtttttgctgagatactctctcagttgttgtccacaacaattatgtatgtg |
24809249 |
T |
|
| Q |
411 |
tttcagagtttatattatgttttcatgtatacatataattacatgttcatttactcatgtaagggttttatacttgtattgtataatgtatagtatagta |
510 |
Q |
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| T |
24809248 |
tttcagagtttatattatgttttcatgtatacatataattacatgttcatttactcatgtaagggttttatacttgtattgtataatgtatagtatagta |
24809149 |
T |
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| Q |
511 |
taat |
514 |
Q |
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|||| |
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| T |
24809148 |
taat |
24809145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 29946405 - 29946339
Alignment:
| Q |
138 |
taatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaagg |
204 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
29946405 |
taatatatcaaatttgatcctacctaacatgtttaaatgatatacagcagacggaaataaatgaagg |
29946339 |
T |
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