View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7017_low_13 (Length: 512)
Name: NF7017_low_13
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_13 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 45 - 490
Target Start/End: Complemental strand, 36956548 - 36956103
Alignment:
| Q |
45 |
aatgattaacattttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatga |
144 |
Q |
| |
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||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36956548 |
aatgaataacatcttgatcaggtttactttcagtttgtgatgccaagaaaagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatga |
36956449 |
T |
|
| Q |
145 |
tggaaggaaaagaagcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataaca |
244 |
Q |
| |
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| T |
36956448 |
tggaaggaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataaca |
36956349 |
T |
|
| Q |
245 |
gtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatc |
344 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| | |||||||||||||| |
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|
| T |
36956348 |
gtgtacagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagaagcggcacaacaattttgagagtaaaagttaccaattcagttaatc |
36956249 |
T |
|
| Q |
345 |
caagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagatt |
444 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| | || |||||||||||||| ||||| |
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| T |
36956248 |
caagtgttgcccaaaagagtatgatggtagcactaattgaactgaacaatgatattgtgatgaagataatgaaaacatggaacattgcatgacatagatt |
36956149 |
T |
|
| Q |
445 |
gtgtgcttttccttctgattcacctggaacagcaaaacatgctgct |
490 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
36956148 |
gtgtgcttttccttctgcttcacctggaacagctaaacatgctgct |
36956103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 58 - 490
Target Start/End: Complemental strand, 36935681 - 36935249
Alignment:
| Q |
58 |
ttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaaga |
157 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| || || ||||||||||||| ||| || ||||||||||||| |||||||||||||||| |
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|
| T |
36935681 |
ttgatcaggtttactttcagttcgtgatgccaaaaaaagatatggataatgagaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaaga |
36935582 |
T |
|
| Q |
158 |
agcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccag |
257 |
Q |
| |
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|||| |||| ||||||| || |||||||| || |||||||||||||||||||| | ||||| | |||||||| ||||||||||||||||||| |
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|
| T |
36935581 |
agcacatataacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagaccag |
36935482 |
T |
|
| Q |
258 |
caatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgccca |
357 |
Q |
| |
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| |||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |
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| T |
36935481 |
ccatgaaagccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagaggtaaagtcagcaattcagttaacccaaatgttgccca |
36935382 |
T |
|
| Q |
358 |
aaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttcct |
457 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| || |||||||||| |||||| |||||||||||||||||| |
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| T |
36935381 |
aaagagtatgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattgtatgacatagattgtgtgcttttcct |
36935282 |
T |
|
| Q |
458 |
tctgattcacctggaacagcaaaacatgctgct |
490 |
Q |
| |
|
|||| ||||| |||||| || |||||||||||| |
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|
| T |
36935281 |
tctgcttcacatggaacggctaaacatgctgct |
36935249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 92 - 490
Target Start/End: Complemental strand, 36948425 - 36948027
Alignment:
| Q |
92 |
aaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaagcatatatnnnnnnntcacaaccgcaacaaaaa |
191 |
Q |
| |
|
|||||| | ||||||| |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||| |
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| T |
36948425 |
aaaagaaaggggtagtaggaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatataaaagaatctcaaccacaacaaaaa |
36948326 |
T |
|
| Q |
192 |
ttagagccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgat |
291 |
Q |
| |
|
| | | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| | ||| ||||||||||| |
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|
| T |
36948325 |
tcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgat |
36948226 |
T |
|
| Q |
292 |
tccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaag |
391 |
Q |
| |
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|||||| | |||||||| ||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || |
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|
| T |
36948225 |
tccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaat |
36948126 |
T |
|
| Q |
392 |
aatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgct |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
36948125 |
aatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgct |
36948027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 218 - 490
Target Start/End: Original strand, 37069660 - 37069932
Alignment:
| Q |
218 |
gccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttga |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||| || |||| |||||||| | |
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|
| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
318 |
gagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaa |
417 |
Q |
| |
|
| | ||||||| ||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
418 |
tgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgct |
490 |
Q |
| |
|
||||| |||||||||||||| || |||| ||||||||| || | |||||||||||||||||||||||||||| |
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|
| T |
37069860 |
agcttggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgct |
37069932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 175 - 490
Target Start/End: Original strand, 37079377 - 37079692
Alignment:
| Q |
175 |
cacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagat |
274 |
Q |
| |
|
||||||| |||| |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| |||||| |
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|
| T |
37079377 |
cacaaccacaaccaaaattgaagctacaaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagat |
37079476 |
T |
|
| Q |
275 |
aatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtag |
374 |
Q |
| |
|
| ||| | ||||||||||||||| || ||||| || ||||| |||| ||||||| |||||||| || |||||| ||||||||||||||||||| |||| |
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|
| T |
37079477 |
agtgagacgagagcgattccaagaagtggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtag |
37079576 |
T |
|
| Q |
375 |
cactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaac |
474 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||| | || |||||||||||||| || |||| ||||||||| || | |||||||||||| |
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|
| T |
37079577 |
aactaatggaactgaacaatgatattgtgatgaatataatgaaaacatggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaac |
37079676 |
T |
|
| Q |
475 |
agcaaaacatgctgct |
490 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37079677 |
agcaaaacatgctgct |
37079692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 59 - 490
Target Start/End: Original strand, 12493290 - 12493721
Alignment:
| Q |
59 |
tgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaa |
158 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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|
| T |
12493290 |
tgatcatgtttactttcagttcgtgatgccaaaaaaagataaaggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactga |
12493389 |
T |
|
| Q |
159 |
gcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagc |
258 |
Q |
| |
|
|||||||| |||||||||||| |||||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
12493390 |
gcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactagc |
12493489 |
T |
|
| Q |
259 |
aatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaa |
358 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
12493490 |
catgaaagccaaagataacgaaatgagagcgattccaagaagcggcatgaccattttgagagtaaaagttaccaattcagttaacccaagtgttgcccaa |
12493589 |
T |
|
| Q |
359 |
aagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttcctt |
458 |
Q |
| |
|
||||||||||| |||||||||||||||| || || ||||||||||||||||||||||| || || |||||||||||||| || ||||||||||||||| |
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|
| T |
12493590 |
aagagtatgatagtagcactaatggaactgaacaacgatattgtgatgaagataatgaaagcatggaacattgcatgacataggctgtgtgcttttcctt |
12493689 |
T |
|
| Q |
459 |
ctgattcacctggaacagcaaaacatgctgct |
490 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| |
|
|
| T |
12493690 |
ctgcttcacctggaacagctaaacatgctgct |
12493721 |
T |
|
Back To:
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