View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_14 (Length: 487)
Name: NF7017_low_14
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 79 - 469
Target Start/End: Original strand, 21902708 - 21903095
Alignment:
| Q |
79 |
cctctcccacaacatttttctatatatctcttaattacttcttcatttgtatttctttttctgaaacaaatgtcagaatacaagtgcgctttcctacgat |
178 |
Q |
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| T |
21902708 |
cctctcccacaacatttttctatatatctcttaattacttcttcatttgtatttctttttctgaaacaaatgtcagaatacaagtgcgctttcctacgat |
21902807 |
T |
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| Q |
179 |
tatatttttgtttgttttcctatctgctatgcagggaatcactggtgtccccctattccaagtggctacaatccagctacctgggtacttgaggtcacta |
278 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21902808 |
tatatttttgtttgttttcctatctgctctgcagggaatcactggtgtccccctattccaagtggctacaatccagctacctgggtacttgaggtcacta |
21902907 |
T |
|
| Q |
279 |
caccagctgttgaagagagaattggttcagattttgctaaaaaatttacaagaattcggcgcaattcaggtgtttctaatgttatgtttcttagcttcta |
378 |
Q |
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| T |
21902908 |
caccggctgttgaagagagaattggttcagattttgct--gaaatttacaagaattcggcgcaattcaggtgtttctaatgtt-tgtttcttaacttcta |
21903004 |
T |
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| Q |
379 |
ttgcccaagtcttcttgttcttattttttaggtaatgccggagagatatggtatgaatgaaaggctcgtgttttagaaatgttaaagaact |
469 |
Q |
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| T |
21903005 |
ttgcccaagtctttttgttcttattttttaggtaatgctggagagatatggtatgaatgaaaggctcgtgttttagaaatgttaaagaact |
21903095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 21902612 - 21902696
Alignment:
| Q |
7 |
tagattattctcggcatttctagcttttactaaaaggatccatgatcagagtagttcaacatggatttggatcctctcccacaac |
91 |
Q |
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| T |
21902612 |
tagattcttctcggcatttctagcttttactaaaaggatccatgatcagagtagttctacatggatttggatcctcccccacaac |
21902696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 126 - 469
Target Start/End: Original strand, 29778673 - 29779014
Alignment:
| Q |
126 |
tgtatttctttttctgaaacaaatgtcagaatacaagtgcgctttcctacgattatatttttgtttgttttcctatctgctatgcagggaatcactggtg |
225 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
29778673 |
tgtatttcttattctgaaacaaatgtcagaataaaagtgcgctttcctgcgattatacttttggttgttttcctatctgctctgcagggaatcactggtg |
29778772 |
T |
|
| Q |
226 |
t-ccccctattccaagtggctacaatccagctacctgggtacttgaggtcactacaccagctgttgaagagagaattggttcagattttgctaaaaaatt |
324 |
Q |
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| T |
29778773 |
tcccccctattccaagtggctacaatccagctacctgggtacttgaggtcactacacctgctgtcgaagagagaattggttcagattttgct--gaaatt |
29778870 |
T |
|
| Q |
325 |
tacaagaattcggcgcaattcaggtgtttctaatgttatgtttcttagcttctattgcccaagtcttcttgttcttattttttaggtaatgccggagaga |
424 |
Q |
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||||||||||| || |||||||||||||||||| ||||||||| ||||||||| ||||||||||||| | |||||| |||||||||||||| |||||| |
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| T |
29778871 |
tacaagaattcagcacaattcaggtgtttctaaagttatgtttattagcttctgttgcccaagtcttttcattctta-tttttaggtaatgcttgagaga |
29778969 |
T |
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| Q |
425 |
tatggtatgaatgaaaggctcgtgttttagaaatgttaaagaact |
469 |
Q |
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| T |
29778970 |
tatggtatgaatgaaaggctcgtgttctagaaatgttaaagaact |
29779014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 320 - 469
Target Start/End: Original strand, 29779027 - 29779177
Alignment:
| Q |
320 |
aaatttacaagaattcggcgcaattcaggtgtttctaatgttatgtttcttagcttctattgcccaagtcttcttgttctt-attttttaggtaatgccg |
418 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||| | |
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| T |
29779027 |
aaatttataagaattcggcacaattcaggtgtttctaatgttatgttcattagcttcttttgcccaagtctttttgttcttaattttttaggtaatgcgg |
29779126 |
T |
|
| Q |
419 |
gagagatatggtatgaatgaaaggctcgtgttttagaaatgttaaagaact |
469 |
Q |
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||||||||||||||||||||||| ||| |||| ||||||||||||| |||| |
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| T |
29779127 |
gagagatatggtatgaatgaaagactcatgttctagaaatgttaaataact |
29779177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 29778194 - 29778277
Alignment:
| Q |
8 |
agattattctcggcatttctagcttttactaaaaggatccatgatcagagtagttcaacatggatttggatcctctcccacaac |
91 |
Q |
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| T |
29778194 |
agattcttcacggcatttctagattttactaaaaggagccatgatcggagtagttctacatggatttggatcctctcccccaac |
29778277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 29778289 - 29778325
Alignment:
| Q |
79 |
cctctcccacaacatttttctatatatctcttaatta |
115 |
Q |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
29778289 |
cctctcccacaacatttttctttatatctcttaatta |
29778325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 29431187 - 29431220
Alignment:
| Q |
68 |
tggatttggatcctctcccacaacatttttctat |
101 |
Q |
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| T |
29431187 |
tggatttgaatcctctcccacaacatttttctat |
29431220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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