View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_16 (Length: 478)
Name: NF7017_low_16
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 21 - 470
Target Start/End: Original strand, 39111140 - 39111589
Alignment:
| Q |
21 |
atgtgaattagttgaatatatccattgttgtgtgagtaatgctttaaaagtgaagaatctgtttctagcggaagttgctacactaccacaacatggtgaa |
120 |
Q |
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| T |
39111140 |
atgtgaattagttgaatatatccattgttgtgtgagtaatgctttaaaagtgaagaatctgtttctagcggaagttgctacactaccacaatatggtgaa |
39111239 |
T |
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| Q |
121 |
cctaagtttgaattccgatttgaagaggtaacccaatttaatgttggatatgctttgaatatgattaaatcacgcggagaaccaatgtaaaaatatagtg |
220 |
Q |
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| T |
39111240 |
cttaagtttgaattccgatttgaagaggtaacccaatttaatgttggatatgctttgaatatgattaaatcacgcggagaaccaatgtaaaaatatagtg |
39111339 |
T |
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| Q |
221 |
ataaatgccttttcaatctttctctgagatcaaatttaattaagtttacattaatttctttgcatggcatgacatatttccttgacaattggtctattaa |
320 |
Q |
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| T |
39111340 |
ataaatgccttttcaatctttctctgagatcaaatttaattaagtttacattaatttctttgcatggcatgacatatttccttgacaattggtctattaa |
39111439 |
T |
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| Q |
321 |
tgtaaactaaactgaaacctatgtctctcattctctaatgacttcaacataccacagtccacattccaaaaatcagtacaaaataagcatttgttttact |
420 |
Q |
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| T |
39111440 |
tgtaaactaaactgaaacctatgtctctcattctctaatgacttcaacataccacagtccacattccaaaaatcagtacagaataagcatttgttttact |
39111539 |
T |
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| Q |
421 |
ttatcatggctcctaaaatcctaagatcccttctggtattttttcttctc |
470 |
Q |
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| T |
39111540 |
ttatcctggctcctaaaatcctaagatcccttctggtattttttcttctc |
39111589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 39106565 - 39106646
Alignment:
| Q |
23 |
gtgaattagttgaatatatccattgttgtgtgag--taatgctttaaaagtgaagaatctgtttctagcggaagttgctaca |
102 |
Q |
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| T |
39106565 |
gtgaattagttgaatatatccattgttgtgtgtgaataatgctttaaaagtgaataatctgtttccagcggaagttgctaca |
39106646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 39531437 - 39531345
Alignment:
| Q |
356 |
taatgacttca--acataccacagtccacattccaaaaatcagtacaaaataagcatttgttttactttatcatggctcctaaaatcctaaga |
446 |
Q |
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| T |
39531437 |
taatgacttcatcacacaccacaatccatattgcaaaaatcatcacaaattaagtatttgtttcaattcattatgactcctaaaatcctaaga |
39531345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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