View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7017_low_18 (Length: 458)

Name: NF7017_low_18
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7017_low_18
NF7017_low_18
[»] chr3 (18 HSPs)
chr3 (166-432)||(11394042-11394308)
chr3 (166-432)||(46233725-46233993)
chr3 (108-159)||(36827327-36827378)
chr3 (109-159)||(55389342-55389392)
chr3 (109-168)||(53957864-53957923)
chr3 (105-159)||(48808572-48808626)
chr3 (109-166)||(36280190-36280247)
chr3 (109-158)||(53958973-53959022)
chr3 (110-159)||(55388259-55388308)
chr3 (125-159)||(3671251-3671285)
chr3 (105-159)||(36279152-36279206)
chr3 (110-164)||(45600833-45600887)
chr3 (108-166)||(47117944-47118002)
chr3 (105-155)||(52318186-52318236)
chr3 (118-159)||(33837363-33837404)
chr3 (110-166)||(47075245-47075301)
chr3 (110-166)||(48573178-48573234)
chr3 (110-166)||(48809529-48809585)
[»] chr2 (11 HSPs)
chr2 (166-432)||(9208594-9208860)
chr2 (110-159)||(43380787-43380836)
chr2 (109-157)||(31443098-31443146)
chr2 (105-155)||(14704209-14704259)
chr2 (109-159)||(32765137-32765187)
chr2 (109-166)||(24459327-24459384)
chr2 (118-159)||(33163320-33163361)
chr2 (113-159)||(31442551-31442597)
chr2 (105-159)||(39016252-39016306)
chr2 (109-153)||(2911360-2911404)
chr2 (112-156)||(21733627-21733671)
[»] chr1 (16 HSPs)
chr1 (166-432)||(32440413-32440679)
chr1 (18-80)||(6613310-6613372)
chr1 (109-158)||(39726540-39726589)
chr1 (111-155)||(34085746-34085790)
chr1 (109-168)||(6613840-6613899)
chr1 (105-156)||(9339849-9339900)
chr1 (109-156)||(26518312-26518359)
chr1 (105-159)||(7944355-7944409)
chr1 (107-164)||(16249858-16249915)
chr1 (109-166)||(52439654-52439711)
chr1 (105-148)||(32665638-32665681)
chr1 (108-159)||(34088321-34088372)
chr1 (110-155)||(6612634-6612679)
chr1 (109-166)||(51453592-51453649)
chr1 (111-159)||(25038101-25038149)
chr1 (111-159)||(25043313-25043361)
[»] chr7 (20 HSPs)
chr7 (166-400)||(16262478-16262712)
chr7 (105-159)||(45583794-45583848)
chr7 (109-159)||(7258475-7258525)
chr7 (105-159)||(7259554-7259608)
chr7 (105-155)||(30924878-30924928)
chr7 (109-159)||(44333337-44333387)
chr7 (105-155)||(44334319-44334369)
chr7 (109-166)||(24935566-24935622)
chr7 (108-164)||(6680385-6680441)
chr7 (110-166)||(12223553-12223609)
chr7 (109-159)||(12221501-12221551)
chr7 (105-159)||(35728955-35729009)
chr7 (109-159)||(45584370-45584419)
chr7 (110-155)||(10898947-10898992)
chr7 (105-158)||(39708330-39708383)
chr7 (109-166)||(43461590-43461647)
chr7 (110-159)||(48788546-48788595)
chr7 (111-159)||(7509327-7509375)
chr7 (110-170)||(34710257-34710317)
chr7 (110-166)||(46286716-46286772)
[»] chr4 (5 HSPs)
chr4 (18-167)||(26170855-26171004)
chr4 (105-159)||(42278249-42278303)
chr4 (109-159)||(20599759-20599809)
chr4 (105-155)||(47874767-47874817)
chr4 (110-159)||(47878358-47878407)
[»] chr8 (10 HSPs)
chr8 (109-166)||(28619405-28619462)
chr8 (110-166)||(41122616-41122672)
chr8 (105-159)||(1952839-1952893)
chr8 (109-156)||(10406409-10406456)
chr8 (110-169)||(35177584-35177643)
chr8 (109-159)||(32898318-32898368)
chr8 (109-158)||(35178678-35178727)
chr8 (118-155)||(41121329-41121366)
chr8 (108-148)||(5737875-5737915)
chr8 (108-152)||(39138516-39138560)
[»] chr5 (16 HSPs)
chr5 (109-166)||(14891020-14891077)
chr5 (109-159)||(2464869-2464919)
chr5 (108-166)||(9537235-9537293)
chr5 (109-159)||(40611460-40611510)
chr5 (339-408)||(21592442-21592511)
chr5 (339-408)||(21596559-21596628)
chr5 (109-157)||(544850-544898)
chr5 (109-169)||(32641600-32641660)
chr5 (108-155)||(4593973-4594020)
chr5 (109-156)||(25590633-25590680)
chr5 (109-156)||(34173483-34173530)
chr5 (109-159)||(578625-578675)
chr5 (109-159)||(2314387-2314437)
chr5 (113-159)||(8075710-8075756)
chr5 (118-160)||(19271660-19271702)
chr5 (109-169)||(40612532-40612592)
[»] scaffold0767 (1 HSPs)
scaffold0767 (109-159)||(6106-6156)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 166 - 432
Target Start/End: Original strand, 11394042 - 11394308
Alignment:
Q  166 taacactccaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccctttatatcaaactttgtg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11394042 taacactccaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccctttatatcaaactttgtg 11394141  T
Q  266 aaaagcgtgcatagttccaatatttgcattgttaattccaatgttttggttaccaatgtaatgcatatcgtaaaacaacaacctctccaacccaccctct 365  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11394142 aaaagcgtgcatagttccaatgtttgcattgttaattccaatgttttggttaccaatgtaatgcatatagtaaaacaacaacctctccaacccaccctct 11394241  T
Q  366 tcatcgtcgctttctctcctccctctcttttcctcttccacaaattctcactcaagcctttcagctc 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11394242 tcatcgtcgctttctctcctccctctcttttcctcttccacaaattctcactcaagcctttcagctc 11394308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 166 - 432
Target Start/End: Complemental strand, 46233993 - 46233725
Alignment:
Q  166 taacactccaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccctttatatcaaactttgtg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46233993 taacactccaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccctttatatcaaactttgtg 46233894  T
Q  266 aaaagcgtgcatagttccaatatttgcattgttaattccaatgttttggttaccaatgtaatgcatatcgtaaaacaacaacctctccaacccaccctct 365  Q
    ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46233893 aaacgcgtgcatagttccaatgtttgcattgttaattccaatgctttggttaccaatgtaatgcatatagtaaaacaacaacctctccaacccaccctct 46233794  T
Q  366 tcatcgtcgctttctctcctccctctcttttcctcttccacaaat--tctcactcaagcctttcagctc 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  46233793 tcatcgtcgctttctctcctccctctcttttcctcttccacaaattctctcactcaagcctttcagctc 46233725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 36827327 - 36827378
Alignment:
Q  108 agatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  36827327 agatttaggaatttgaaattcaatttggggatattgattttcgattcaggga 36827378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 55389342 - 55389392
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  55389342 gatttaggaatttgatattcaatttgggaatattgattttcggttcaggga 55389392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 53957923 - 53957864
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagtaa 168  Q
    |||||||| |||||| ||||||||||| |||||||||||| |||||| ||| ||||||||    
T  53957923 gatttagggatttgacattcaatttggggatattgatttttggttcatggactaaagtaa 53957864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 48808626 - 48808572
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||| |||||| |||||||||||  ||||||||||| ||||||||||    
T  48808626 ttaagatttagggatttgatattcaatttgggaatattgatttttggttcaggga 48808572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 36280190 - 36280247
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||| ||||| ||||||    
T  36280190 gatttaggaatttgatattcaatttgggaatattgatttttggtttagggactaaagt 36280247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 53958973 - 53959022
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggg 158  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||||||||    
T  53958973 gatttaggaatttgatattcaatttgggaatattgatttttggttcaggg 53959022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 55388308 - 55388259
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||| |||||| ||||||||||| |||||||||||| ||||||||||    
T  55388308 atttagggatttgatattcaatttggggatattgatttttggttcaggga 55388259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 3671285 - 3671251
Alignment:
Q  125 attcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||| |||||||||||||||||||||||    
T  3671285 attcaatttggggatattgattttcggttcaggga 3671251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 36279206 - 36279152
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||| |||||| ||||||||||| ||||||  |||| ||||||||||    
T  36279206 ttaagatttagggatttgatattcaatttggggatatttttttttggttcaggga 36279152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 45600833 - 45600887
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaa 164  Q
    ||||||| ||||||||||||| |||| |||||||||||| |||||| ||| ||||    
T  45600833 atttagggatttgaaattcaagttggggatattgatttttggttcaaggactaaa 45600887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 47117944 - 47118002
Alignment:
Q  108 agatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    ||||||||| ||| || |||||| |||| |||||||||||| |||||||||| ||||||    
T  47117944 agatttagggattcgagattcaagttggggatattgatttttggttcagggactaaagt 47118002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 52318186 - 52318236
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttca 155  Q
    |||||||||||| |||||| ||||||||||| ||||||| |||| ||||||    
T  52318186 ttaagatttagggatttgatattcaatttggggatattgttttttggttca 52318236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 33837404 - 33837363
Alignment:
Q  118 atttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||||| ||| |||||||||||| ||||||||||    
T  33837404 atttgaaattcaatctggggatattgatttttggttcaggga 33837363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 47075245 - 47075301
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    ||||||| |||| | |||||| |||| |||||||||||| |||||||||| ||||||    
T  47075245 atttagggatttaagattcaagttggggatattgatttttggttcagggactaaagt 47075301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 48573234 - 48573178
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    |||||||||||||| ||||||||| |  ||||||||||| |||||| |||| |||||    
T  48573234 atttaggaatttgatattcaattttggaatattgatttttggttcatggatcaaagt 48573178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 48809529 - 48809585
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    |||||||||||||| ||||||||| |  ||||||||||| |||||| |||| |||||    
T  48809529 atttaggaatttgatattcaatttaggaatattgatttttggttcatggatcaaagt 48809585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 166 - 432
Target Start/End: Original strand, 9208594 - 9208860
Alignment:
Q  166 taacactccaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccctttatatcaaactttgtg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9208594 taacactccaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccctttatatcaaactttgtg 9208693  T
Q  266 aaaagcgtgcatagttccaatatttgcattgttaattccaatgttttggttaccaatgtaatgcatatcgtaaaacaacaacctctccaacccaccctct 365  Q
    ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9208694 aaacgcgtgcatagttccaatgtttgcattgttaattccaatgctttggttaccaatgtaatgcatatagtaaaacaacaacctctccaacccaccctct 9208793  T
Q  366 tcatcgtcgctttctctcctccctctcttttcctcttccacaaattctcactcaagcctttcagctc 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9208794 tcatcgtcgctttctctcctccctctcttttcctcttccacaaattctcactcaagccttttagctc 9208860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 43380836 - 43380787
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  43380836 atttaggaatttgaaattcaatttggggatattgatttttggttcaggga 43380787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 31443098 - 31443146
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagg 157  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  31443098 gatttaggaatttgagatttaatttggagatattgattttcggttcagg 31443146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 14704259 - 14704209
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttca 155  Q
    |||||||||||| |||||| ||||||||||| |||||||||||| ||||||    
T  14704259 ttaagatttagggatttgatattcaatttggggatattgatttttggttca 14704209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 32765187 - 32765137
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||| |||||| ||||||||||| |||||||||||| ||||||||||    
T  32765187 gatttagggatttgatattcaatttggggatattgatttttggttcaggga 32765137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 24459327 - 24459384
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    |||||| |||||||| |||||||||||  ||||||||||| ||||||||||| |||||    
T  24459327 gatttacgaatttgatattcaatttgggaatattgatttttggttcagggatcaaagt 24459384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 33163320 - 33163361
Alignment:
Q  118 atttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  33163320 atttgaaattcaatttggggatattgatttttggttcaggga 33163361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 31442597 - 31442551
Alignment:
Q  113 taggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||| |||||| ||||||||| | |||||||||||||||||||||||    
T  31442597 tagggatttgagattcaatttagggatattgattttcggttcaggga 31442551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 39016252 - 39016306
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||| |||| | |||||||||||  ||||||||||| ||||||||||    
T  39016252 ttaagatttagggatttcatattcaatttgggcatattgatttttggttcaggga 39016306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 2911360 - 2911404
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggtt 153  Q
    ||||||||||||||| |||||||||||  ||||||||||| ||||    
T  2911360 gatttaggaatttgatattcaatttggaaatattgatttttggtt 2911404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 21733627 - 21733671
Alignment:
Q  112 ttaggaatttgaaattcaatttggtgatattgattttcggttcag 156  Q
    ||||| |||||| |||||||||||  |||||||||||||||||||    
T  21733627 ttagggatttgagattcaatttgggaatattgattttcggttcag 21733671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 166 - 432
Target Start/End: Complemental strand, 32440679 - 32440413
Alignment:
Q  166 taacactccaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccctttatatcaaactttgtg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32440679 taacactccaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccctttatatcaaactttgtg 32440580  T
Q  266 aaaagcgtgcatagttccaatatttgcattgttaattccaatgttttggttaccaatgtaatgcatatcgtaaaacaacaacctctccaacccaccctct 365  Q
    ||| | |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  32440579 aaacgtgtgcatagtttcaatgtttgcattgttaattccaatgctttggttaccaatgtaatgcatatagtaaaacaacaacctctccgacccaccctct 32440480  T
Q  366 tcatcgtcgctttctctcctccctctcttttcctcttccacaaattctcactcaagcctttcagctc 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32440479 tcatcgtcgctttctctcctccctctcttttcctcttccacaaattctcacccaagcctttcagctc 32440413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 6613310 - 6613372
Alignment:
Q  18 ccaaccactacgtagaaaatacctactgaagtagtccagcaagtactgcatggaaattttggt 80  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  6613310 ccaaccactacatagaaaatacctaccgaagtagtccagcaagtactacatagaaattttggt 6613372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 39726540 - 39726589
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggg 158  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||    
T  39726540 gatttagggatttggaattcaatttggtgatattgatttttggttcaggg 39726589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 34085790 - 34085746
Alignment:
Q  111 tttaggaatttgaaattcaatttggtgatattgattttcggttca 155  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  34085790 tttaggaatttgaaattcaatttggggatattgatttttggttca 34085746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 6613840 - 6613899
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagtaa 168  Q
    |||||||| |||||| ||||||||||| |||||||||||| ||||||||||  |||||||    
T  6613840 gatttagggatttgagattcaatttggggatattgatttttggttcagggaacaaagtaa 6613899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 9339900 - 9339849
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcag 156  Q
    |||||||||||| |||||| ||||||||||| |||||||||||| |||||||    
T  9339900 ttaagatttagggatttgatattcaatttggggatattgatttttggttcag 9339849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 26518359 - 26518312
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcag 156  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  26518359 gatttaggaatttgagattcaatttggagatattggttttcggttcag 26518312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 7944409 - 7944355
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||| |||||| ||||||||||| |||||||||||| ||| ||||||    
T  7944409 ttaagatttagggatttgatattcaatttggggatattgatttttggtccaggga 7944355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 16249915 - 16249858
Alignment:
Q  107 aagatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaa 164  Q
    |||||||||| |||| | ||||||||| | ||||||||||||||||||||||| ||||    
T  16249915 aagatttagggatttaagattcaatttagggatattgattttcggttcagggactaaa 16249858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 52439711 - 52439654
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    ||||||||||||||| ||||||||||  |||||||||||| |||| |||||| |||||    
T  52439711 gatttaggaatttgatattcaatttgaggatattgatttttggtttagggatcaaagt 52439654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 32665638 - 32665681
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgatttt 148  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||    
T  32665638 ttaagatttagggatttgatattcaatttggggatattgatttt 32665681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 34088321 - 34088372
Alignment:
Q  108 agatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||| |||||||||||||||||| |||||||| |||  |||||||||    
T  34088321 agatttagggatttgaaattcaatttggggatattgaatttttgttcaggga 34088372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 6612679 - 6612634
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttca 155  Q
    ||||||| |||||| ||||||||||| |||||||||||| ||||||    
T  6612679 atttagggatttgagattcaatttggggatattgatttttggttca 6612634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 51453592 - 51453649
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    |||||||| |||||||||||||||||  |||||||||||  | ||||||||| |||||    
T  51453592 gatttagggatttgaaattcaatttgcggatattgatttatgattcagggatcaaagt 51453649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 25038149 - 25038101
Alignment:
Q  111 tttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||| |||||| ||||||||| | |||||||||||| ||||||||||    
T  25038149 tttagggatttgagattcaatttagggatattgatttttggttcaggga 25038101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 25043361 - 25043313
Alignment:
Q  111 tttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||| |||||| ||||||||| | |||||||||||| ||||||||||    
T  25043361 tttagggatttgagattcaatttagggatattgatttttggttcaggga 25043313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 166 - 400
Target Start/End: Complemental strand, 16262712 - 16262478
Alignment:
Q  166 taacactccaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccctttatatcaaactttgtg 265  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16262712 taacacttcaattatcactccaaaaccctaatcctaaagttttaggcgccaactaattatggcccttggattgatccagccgtttatatcaaactttgtg 16262613  T
Q  266 aaaagcgtgcatagttccaatatttgcattgttaattccaatgttttggttaccaatgtaatgcatatcgtaaaacaacaacctctccaacccaccctct 365  Q
    ||| |||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16262612 aaacgcgtgcattgtttcaatgtttgcattgttaattccaatgctttggttaccaatgtaatgcatatagtaaaacaacaacctctccaacccaccctct 16262513  T
Q  366 tcatcgtcgctttctctcctccctctcttttcctc 400  Q
    |||| || |||||||||||||||||||||||||||    
T  16262512 tcattgttgctttctctcctccctctcttttcctc 16262478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 45583848 - 45583794
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||| |||||| ||||||||||| |||||||||||| ||||||||||    
T  45583848 ttaagatttagggatttgatattcaatttggggatattgatttttggttcaggga 45583794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 7258525 - 7258475
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||||||| |||||||||||  ||||||||||| ||||||||||    
T  7258525 gatttaggaatttgatattcaatttgggaatattgatttttggttcaggga 7258475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 7259554 - 7259608
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||| |||||| ||||||||||| |||||| ||||| ||||||||||    
T  7259554 ttaagatttagggatttgatattcaatttggggatattaatttttggttcaggga 7259608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 30924878 - 30924928
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttca 155  Q
    |||||||||||| |||||| ||||||||||| |||||||||||| ||||||    
T  30924878 ttaagatttagggatttgatattcaatttggggatattgatttttggttca 30924928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 44333387 - 44333337
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||||||| |||||||||||  ||||||||||| ||||||||||    
T  44333387 gatttaggaatttgatattcaatttgggaatattgatttttggttcaggga 44333337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 44334319 - 44334369
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttca 155  Q
    |||||||||||| |||||| ||||||||||| |||||||||||| ||||||    
T  44334319 ttaagatttagggatttgatattcaatttggggatattgatttttggttca 44334369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 24935566 - 24935622
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    ||||||||||||||| |||||||||||||||| |||||||  |||||||||| |||||    
T  24935566 gatttaggaatttgagattcaatttggtgata-tgatttttagttcagggatcaaagt 24935622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 6680385 - 6680441
Alignment:
Q  108 agatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaa 164  Q
    ||||||| |||||| ||||||||||||| |||||||||||| |||| ||||| ||||    
T  6680385 agatttatgaatttaaaattcaatttggggatattgatttttggtttagggactaaa 6680441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 12223553 - 12223609
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    ||||||| |||||| ||||||||||| |||||||||||| |||||| |||| |||||    
T  12223553 atttagggatttgagattcaatttggggatattgatttttggttcaaggatcaaagt 12223609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 12221551 - 12221501
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||| ||||||| ||||||||||| ||||||||| || ||||||||||    
T  12221551 gatttagaaatttgatattcaatttggggatattgatctttggttcaggga 12221501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 35728955 - 35729009
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||| |||| | |||||||||||  ||||||||||| ||||||||||    
T  35728955 ttaagatttagggatttaatattcaatttgggaatattgatttttggttcaggga 35729009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 45584370 - 45584419
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||||||| |||||||||||  ||||||||||| ||||||||||    
T  45584370 gatttaggaatttgatattcaatttgggaatattgatttt-ggttcaggga 45584419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 10898947 - 10898992
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttca 155  Q
    |||||||||||||| |||||||||||  ||||||||||| ||||||    
T  10898947 atttaggaatttgatattcaatttgggaatattgatttttggttca 10898992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 39708383 - 39708330
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggg 158  Q
    |||||||||||| |||||||||||||||||   ||||||||||| |||| ||||    
T  39708383 ttaagatttagggatttgaaattcaatttgagaatattgatttttggtttaggg 39708330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 43461590 - 43461647
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    |||||||| |||||| ||||||||  | |||||||||||| ||||||||||| |||||    
T  43461590 gatttagggatttgagattcaattgagggatattgatttttggttcagggatcaaagt 43461647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 48788546 - 48788595
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||||| ||||||||||   ||||||||||| ||||||||||    
T  48788546 atttaggaatttgatattcaatttgtgaatattgatttttggttcaggga 48788595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 7509327 - 7509375
Alignment:
Q  111 tttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||| |||||| ||||||||||| |||||||||||| |||| |||||    
T  7509327 tttagggatttgagattcaatttggggatattgatttttggtttaggga 7509375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 34710257 - 34710317
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagtaaca 170  Q
    |||||||| ||| ||||||||||||  ||| |||||||| | ||||||||| |||||||||    
T  34710257 atttaggattttaaaattcaatttgaggatgttgatttttgattcagggatcaaagtaaca 34710317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 46286772 - 46286716
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    ||||||| |||||||||| |||||||  ||||||||||| |||||| |||| |||||    
T  46286772 atttagggatttgaaatttaatttgggaatattgatttttggttcaaggatcaaagt 46286716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 26171004 - 26170855
Alignment:
Q  18 ccaaccactacgtagaaaatacctactgaagtagtccagcaagtactgcatggaaattttggttgattacgaccaatcataattttcttaagatttagga 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||     
T  26171004 ccaaccactacatagaaaatacctactgaagtagtccagcaagtactgcatagaaattttggttgattactaccaatcataattttcttaagatttaggg 26170905  T
Q  118 atttgaaattcaatttggtgatattgattttcggttcagggattaaagta 167  Q
    |||| |||||||||||||  ||||||||||||||||||||||| ||||||    
T  26170904 atttcaaattcaatttgggaatattgattttcggttcagggatcaaagta 26170855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 42278303 - 42278249
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||| |||||| ||||||||||| |||||||||||| ||||||||||    
T  42278303 ttaagatttagggatttgatattcaatttggggatattgatttttggttcaggga 42278249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 20599759 - 20599809
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||||||| |||||||||||  ||||| ||||| ||||||||||    
T  20599759 gatttaggaatttgagattcaatttgggaatattaatttttggttcaggga 20599809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 47874817 - 47874767
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttca 155  Q
    |||||||||||| |||||| ||||||||| | |||||||||||| ||||||    
T  47874817 ttaagatttagggatttgatattcaattttgggatattgatttttggttca 47874767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 47878358 - 47878407
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||||| ||||||||| |  ||||||||||| ||||||||||    
T  47878358 atttaggaatttgatattcaattttggaatattgatttttggttcaggga 47878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 28619405 - 28619462
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    |||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||    
T  28619405 gatttagggatttgaaattcaatttggggatattgatttttggttcatggattaaagt 28619462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 41122616 - 41122672
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||    
T  41122616 atttaggaatttgagattcaatttggagatattgatttttggttcagggatcaaagt 41122672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 1952839 - 1952893
Alignment:
Q  105 ttaagatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||||||| |||||| |||||||||||  ||||||||||| ||||||||||    
T  1952839 ttaagatttagggatttgatattcaatttgggcatattgatttttggttcaggga 1952893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 10406456 - 10406409
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcag 156  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||||||    
T  10406456 gatttaggaatttgatattcaatttggaaatattgatttttggttcag 10406409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 35177643 - 35177584
Alignment:
Q  110 atttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagtaac 169  Q
    ||||||| |||||| ||||||||||| |||| ||||||| ||||||||||  ||||||||    
T  35177643 atttagggatttgatattcaatttggggatactgatttttggttcagggaccaaagtaac 35177584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 32898318 - 32898368
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||| |||||| ||||||||||  |||||||||||| ||||||||||    
T  32898318 gatttagggatttgatattcaatttgaggatattgatttttggttcaggga 32898368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 35178678 - 35178727
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggg 158  Q
    |||||| |||||||| |||||||||||  ||||||||||| |||||||||    
T  35178678 gatttaagaatttgatattcaatttgggaatattgatttttggttcaggg 35178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 41121366 - 41121329
Alignment:
Q  118 atttgaaattcaatttggtgatattgattttcggttca 155  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  41121366 atttgaaattcaatttggggatattgatttttggttca 41121329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 5737875 - 5737915
Alignment:
Q  108 agatttaggaatttgaaattcaatttggtgatattgatttt 148  Q
    ||||||||| |||||| ||||||||||| ||||||||||||    
T  5737875 agatttagggatttgagattcaatttggggatattgatttt 5737915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 39138516 - 39138560
Alignment:
Q  108 agatttaggaatttgaaattcaatttggtgatattgattttcggt 152  Q
    ||||||||| |||||| |||||||| || ||||||||||||||||    
T  39138516 agatttagggatttgagattcaattcggggatattgattttcggt 39138560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 14891020 - 14891077
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    |||||||||||||||||||||||||||  ||||||||||| | |||||||| ||||||    
T  14891020 gatttaggaatttgaaattcaatttgggaatattgatttttgattcagggactaaagt 14891077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 2464919 - 2464869
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    |||||||| |||||| ||||||||||| |||||||||||| ||||||||||    
T  2464919 gatttagggatttgatattcaatttggggatattgatttttggttcaggga 2464869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 9537293 - 9537235
Alignment:
Q  108 agatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagt 166  Q
    ||||||||| |||||| ||||||||||| |||||||||||| | ||||||||| |||||    
T  9537293 agatttagggatttgagattcaatttggggatattgatttttgattcagggatcaaagt 9537235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 40611510 - 40611460
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||||||| |||||||||||  ||||||||||| ||||||||||    
T  40611510 gatttaggaatttgatattcaatttgggaatattgatttttggttcaggga 40611460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 21592442 - 21592511
Alignment:
Q  339 aacaacaacctctccaacccaccctcttcatcgtcgctttctctcctccctctcttttcctcttccacaa 408  Q
    |||||||||||||| ||||||| ||| ||||| ||||| ||||| |||||||||| | ||| ||||||||    
T  21592442 aacaacaacctctcaaacccacactcctcatcatcgctatctcttctccctctctctcccttttccacaa 21592511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 21596559 - 21596628
Alignment:
Q  339 aacaacaacctctccaacccaccctcttcatcgtcgctttctctcctccctctcttttcctcttccacaa 408  Q
    |||||||||||||| ||||||| ||| ||||| ||||| ||||| |||||||||| | ||| ||||||||    
T  21596559 aacaacaacctctcaaacccacactcctcatcatcgctatctcttctccctctctctcccttttccacaa 21596628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 544898 - 544850
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagg 157  Q
    ||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  544898 gatttaggaatttgatattcaatttgggaatattgatttttggttcagg 544850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 32641600 - 32641660
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagtaac 169  Q
    |||||||| |||| | ||||||||||| |||||||||||| |||| |||||| ||||||||    
T  32641600 gatttagggatttcatattcaatttggggatattgatttttggttgagggatcaaagtaac 32641660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 4593973 - 4594020
Alignment:
Q  108 agatttaggaatttgaaattcaatttggtgatattgattttcggttca 155  Q
    |||||||||||||||| |||||||||||  ||||||||||| ||||||    
T  4593973 agatttaggaatttgatattcaatttgggaatattgatttttggttca 4594020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 25590680 - 25590633
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcag 156  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||||||    
T  25590680 gatttaggaatttgatattcaatttgggaatattgatttttggttcag 25590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 34173530 - 34173483
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcag 156  Q
    |||||||  |||||||||||||||||| |||||||||||| |||||||    
T  34173530 gatttagtgatttgaaattcaatttggggatattgatttttggttcag 34173483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 578625 - 578675
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||| ||| ||| ||||||||| | |||||||||||||||||||||||    
T  578625 gatttagaaatctgagattcaatttagggatattgattttcggttcaggga 578675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 2314387 - 2314437
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||||||| ||||||||||| |||||| | ||| ||||||||||    
T  2314387 gatttaggaatttgatattcaatttggggatattaaattttggttcaggga 2314437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 8075710 - 8075756
Alignment:
Q  113 taggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||| |||||||||||  ||||||||||| ||||||||||    
T  8075710 taggaatttgatattcaatttgggaatattgatttttggttcaggga 8075756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 19271660 - 19271702
Alignment:
Q  118 atttgaaattcaatttggtgatattgattttcggttcagggat 160  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||    
T  19271660 atttgaaattcaacttggagatattgattttcggtttagggat 19271702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 40612532 - 40612592
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcagggattaaagtaac 169  Q
    |||||||| |||||  |||||||||||  ||||||||||| ||||||||||  ||||||||    
T  40612532 gatttagggatttgttattcaatttgggcatattgatttttggttcagggaccaaagtaac 40612592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 6106 - 6156
Alignment:
Q  109 gatttaggaatttgaaattcaatttggtgatattgattttcggttcaggga 159  Q
    ||||||||||||||| |||  |||||| |||||||||||| ||||||||||    
T  6106 gatttaggaatttgagattatatttggggatattgatttttggttcaggga 6156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University