View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_21 (Length: 446)
Name: NF7017_low_21
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 4412139 - 4411919
Alignment:
| Q |
20 |
aactgtttgtagaatgaaatgagtcttcaagtgacatgagaagagaataaaatgtttagctttagtgtgtttgtagaatgtgtcttttaagtggcacagt |
119 |
Q |
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| T |
4412139 |
aactgtttgtagaatgaaatgagtctttaagtgacatgagaagagaataaaatgtttagctttagtgtgtttgtagaatgtgtcttttaagtggcacagt |
4412040 |
T |
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| Q |
120 |
actgtgtaatacttaattgaagagagaagaaaaaataaattcaagaaaaagactcgttaataagatttgaagaaacacataaaatgttgcaataatcact |
219 |
Q |
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| T |
4412039 |
actgtgtaatacttaattgaggagagaagaaaaaataaattcaagaaaaagactcgttaataagatttgaagaaacacgtaaaatgttgcaataatcact |
4411940 |
T |
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| Q |
220 |
ctttatcatgtgcaaagattg |
240 |
Q |
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| T |
4411939 |
ctttatcatgtgcaaagattg |
4411919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 299 - 435
Target Start/End: Complemental strand, 4411862 - 4411726
Alignment:
| Q |
299 |
gagctaagcatttaaaaaggcaacattttgggtctaacatggaagcttctggctttaatggctcaaaaataacatcaagtctttgtgccccatgaacttc |
398 |
Q |
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| T |
4411862 |
gagctaagcatttaaaaaggcaacattttgggtctaacatgcaagcttctggctttaatggctcaaaaataacatcaagtctttgtgccccatgaacttc |
4411763 |
T |
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| Q |
399 |
caccaggatataattgcaattgcaacaaacaccaaca |
435 |
Q |
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| T |
4411762 |
caccaggatataattgcaattgcaacaaacaccaaca |
4411726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 39449534 - 39449627
Alignment:
| Q |
24 |
gtttgtagaatgaaatgagtcttc-aagtgacatgagaagagaataaaatgtttagctttagtgtgtttgtagaatgtgtcttttaagtggcac |
116 |
Q |
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| T |
39449534 |
gtttgtagaatgaaatgtgtcttttaagtgacgtgagaggataataaaatgtttagctttagtgtgtttgtagaatgtgtcttttaagtggcac |
39449627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 40970756 - 40970700
Alignment:
| Q |
49 |
agtgacatgagaagagaataaaatgtttagctttagtgtgtttgtagaatgtgtcttttaag |
110 |
Q |
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| T |
40970756 |
agtgacgtgagaagagaataaaatgttt-----taatgtctttgtagaatgtgtcttttaag |
40970700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 30336431 - 30336487
Alignment:
| Q |
49 |
agtgacatgagaagagaataaaatgtttagctttagtgtgtttgtagaatgtgtcttttaag |
110 |
Q |
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|||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||| |
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| T |
30336431 |
agtgacgtgagaagagaataaaatgttt-----taatgtctttgtagaatgtgtcttttaag |
30336487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 22682609 - 22682665
Alignment:
| Q |
49 |
agtgacatgagaagagaataaaatgtttagctttagtgtgtttgtagaatgtgtcttttaag |
110 |
Q |
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| T |
22682609 |
agtgacgtgagaagagaataaaatgttt-----taatgtctttgtagaatgtgtcttttaag |
22682665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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