View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7017_low_24 (Length: 418)

Name: NF7017_low_24
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7017_low_24
NF7017_low_24
[»] chr6 (14 HSPs)
chr6 (18-401)||(2952278-2952661)
chr6 (15-384)||(3003134-3003500)
chr6 (69-401)||(2937805-2938134)
chr6 (69-397)||(2934948-2935273)
chr6 (69-384)||(2927522-2927834)
chr6 (69-397)||(2996777-2997102)
chr6 (42-397)||(2964858-2965228)
chr6 (69-396)||(2983216-2983540)
chr6 (55-382)||(2974371-2974699)
chr6 (69-295)||(2929757-2929983)
chr6 (255-397)||(2658575-2658714)
chr6 (69-168)||(2658377-2658476)
chr6 (304-387)||(2979247-2979330)
chr6 (332-386)||(2985688-2985742)
[»] scaffold0024 (2 HSPs)
scaffold0024 (55-397)||(34628-34971)
scaffold0024 (304-394)||(44567-44657)
[»] chr7 (1 HSPs)
chr7 (56-396)||(3339375-3339716)
[»] chr3 (2 HSPs)
chr3 (69-384)||(49618774-49619085)
chr3 (72-395)||(49613787-49614107)


Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 2952661 - 2952278
Alignment:
Q  18 atcacgcctgagaacaaacttgcaaagcattaggttgttgtactacttgcaagaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2952661 atcacgcctgagaacaaacttgcaaagcattaggttgttgtactacttgcaagaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagca 2952562  T
Q  118 atggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatctatttctttgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  2952561 atggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccaaggattactacaaaatgcatttatttctttgc 2952462  T
Q  218 ctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaataccattaaacctgttggccacagaatcactactttctccaagcatatt 317  Q
    | | ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2952461 caataatagagaattgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcactactttctccaagcatatt 2952362  T
Q  318 atccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaat 401  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2952361 atctagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaat 2952278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 384
Target Start/End: Original strand, 3003134 - 3003500
Alignment:
Q  15 gacatcacgcctgagaacaaacttgcaaagcattaggttgttgtactacttgcaagaacaaactgtttgaagtaaagtgagagcaaggagtacgattcca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3003134 gacatcacgcctgagaacaaacttgcaaagcattaggttgttgtactacttgcaagaacaaactgtttgaagtaaagtgagagcaaggagtaagattcca 3003233  T
Q  115 gcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatctatttctt 214  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||| || |||||||||| ||  |||||  ||||| | |||| ||  ||||    
T  3003234 gcaatggaagcagcagtttgccagggagttttgcaataatcacgcctgagagtagccttcaacttatgccatggattcttacaataagcatttaagtctt 3003333  T
Q  215 tgcctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaataccattaaacctgttggccacagaatcactactttctccaagcat 314  Q
    |||| | |||||||||||||||||||||   ||||  || || |  ||||| || ||||||||||  ||| |||||||||||   ||| |||||||||||    
T  3003334 tgccaagaatagagaattgagaactgattgtagaacgtataatatctttgccaagaccattaaacaagttagccacagaatc---actgtctccaagcat 3003430  T
Q  315 attatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaaca 384  Q
    ||| |||||||| || |||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  3003431 attttccagtatttcgctctgaacaagtatatccacatccttagcagtatttataaggtaatccaaaaca 3003500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 69 - 401
Target Start/End: Complemental strand, 2938134 - 2937805
Alignment:
Q  69 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 168  Q
    ||||||||||| ||||||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2938134 agaacaaactgattgaagtaaagtgagaataagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagta 2938035  T
Q  169 gctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaa 268  Q
    || |||||||||| || ||||||||| || || |||| || ||||||||  | ||||||||||||||||||||||||||||||||||||| |||||||||    
T  2938034 gccttcaacttatgccaaggattactgcagaaagcatttaattctttgcaaagaatagagaattgagaactgatatcagaatatacaacatttttgcaaa 2937935  T
Q  269 taccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttat 368  Q
     ||||||||||   || ||||||||||||||    |||||||||  ||| |||||||| |   ||  |||||||||| || ||||  |||| ||||||||    
T  2937934 gaccattaaacaaattagccacagaatcactg---tctccaagccaattttccagtattttgttccaaacaagtatacccgcatccttaccggtatttat 2937838  T
Q  369 aaggtaatccaaaacaacaacataatcagcaat 401  Q
    |||||||||||||||||||||||||||||||||    
T  2937837 aaggtaatccaaaacaacaacataatcagcaat 2937805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 69 - 397
Target Start/End: Complemental strand, 2935273 - 2934948
Alignment:
Q  69 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 168  Q
    ||||||||||| ||||||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||     
T  2935273 agaacaaactgattgaagtaaagtgagaaaaagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagta 2935174  T
Q  169 gctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaa 268  Q
    || |||||||||| || ||||||  ||||||| |||| ||  ||||||| || ||||||||| ||||||||||||| ||| | |  |||| |||| ||||    
T  2935173 gccttcaacttatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaaatgagaactgatattagattgtgtaacatttttccaaa 2935074  T
Q  269 taccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttat 368  Q
     ||||||||||  ||| |||||||||||||||   ||  |||||||||||| |||||| ||  || |||||||||||||  |||| ||||||||||||||    
T  2935073 gaccattaaacaagttagccacagaatcacta---tccgcaagcatattatgcagtatttcgttccgaacaagtatatcagcatccgtaccagtatttat 2934977  T
Q  369 aaggtaatccaaaacaacaacataatcag 397  Q
    |||||||||||  ||| ||||||||||||    
T  2934976 aaggtaatccatgacagcaacataatcag 2934948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 69 - 384
Target Start/End: Complemental strand, 2927834 - 2927522
Alignment:
Q  69 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 168  Q
    ||||||||||| |||||||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||     
T  2927834 agaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagta 2927735  T
Q  169 gctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaa 268  Q
    || ||||||||||  || |||||  ||||| | |||| ||  |||||||  | |||||||||||||||||||||   ||||  |  |||| |||| | ||    
T  2927734 gccttcaacttatgtcgtggattcttacaataagcatttaagtctttgcaaagaatagagaattgagaactgattgtagaacgtgtaacatttttaccaa 2927635  T
Q  269 taccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttat 368  Q
     ||||||||||  ||| |||||||||||   ||  |||||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  2927634 gaccattaaacaagttagccacagaatc---accgtctccaagcatattttccagtatttccctctgaacaagtatatccacatccttaccagtatttat 2927538  T
Q  369 aaggtaatccaaaaca 384  Q
    ||||||||||||||||    
T  2927537 aaggtaatccaaaaca 2927522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 69 - 397
Target Start/End: Original strand, 2996777 - 2997102
Alignment:
Q  69 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 168  Q
    ||||||||||| |||||  ||||||||| |||| ||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |||||     
T  2996777 agaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagta 2996876  T
Q  169 gctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaa 268  Q
    || |||||||||| || |||||| |||||||| |||| ||  || ||||  | |||||||||||||||||||||||  | || ||||||| || ||||||    
T  2996877 gccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaa 2996976  T
Q  269 taccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttat 368  Q
     ||||||||||  ||| |||||||||||   ||| |||||||||  ||| |||||||| ||  | |||||||||||||| |||||  ||||||| |||||    
T  2996977 gaccattaaacaagttagccacagaatc---actgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttat 2997073  T
Q  369 aaggtaatccaaaacaacaacataatcag 397  Q
    ||||||||||||||||  |||||||||||    
T  2997074 aaggtaatccaaaacagaaacataatcag 2997102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 42 - 397
Target Start/End: Complemental strand, 2965228 - 2964858
Alignment:
Q  42 aagcattaggttgttgtactacttgcaagaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaagga 141  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||||||| ||||||||||| ||||||||||    
T  2965228 aagcattaggttgttgtactacttgcaagaacaaactgtttgaattaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaagga 2965129  T
Q  142 gttttgccataatcacgcctcagagtggctttcaactt----------att--------ccgaggattactacaaaatgcatctatttctttgcctaaaa 223  Q
    ||  |||  ||||||||| |||||||||  ||||||||          |||        || |||||| | |||||| ||||  |  |||||||  | ||    
T  2965128 gtactgcagtaatcacgcatcagagtggacttcaacttcaacgtcaacattaactggcgccaaggattcccacaaaaagcattcaaatctttgcaaagaa 2965029  T
Q  224 tagagaattgagaactgatatcagaatatacaacacttttgcaaataccattaaacctgttggccacagaatcactactttctccaagcatattatccag 323  Q
    |||||||||||  |||||||| ||||| || ||||  |||| ||| ||||||||||  ||| |||||||||||||||   |||||||||||||| |||||    
T  2965028 tagagaattgaagactgatattagaatgtataacatatttggaaagaccattaaacaagttagccacagaatcacta---tctccaagcatattttccag 2964932  T
Q  324 tatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcag 397  Q
    ||| |   ||||||||||||||||||||||  | ||||||||||||||||||||||||||| ||||||| ||||    
T  2964931 tattttgttctgaacaagtatatccacatccttgccagtatttataaggtaatccaaaacagcaacatagtcag 2964858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 69 - 396
Target Start/End: Complemental strand, 2983540 - 2983216
Alignment:
Q  69 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 168  Q
    ||||||||||||||||| || ||||||| |||| |||| || |||||||| |||||||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  2983540 agaacaaactgtttgaattatagtgagaacaagtagtaagactccagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgagagtg 2983441  T
Q  169 gctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaa 268  Q
    || ||||||||||||| ||||||| ||||||| ||||| | ||| |||   | | |   ||| ||| ||||||  | ||| | ||||||| |||||||||    
T  2983440 gccttcaacttattcctaggattattacaaaaagcatccaattcattggaaagacttacgaaatgataactgagtttagattttacaacatttttgcaaa 2983341  T
Q  269 taccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttat 368  Q
     ||||||||||  | | |||| ||| |    ||  ||||||||||  || || ||||| | | |||||| ||||| |||||||||  ||||| |||||||    
T  2983340 gaccattaaacaagatagccatagatt---gaccgtctccaagcaagttttctagtatttgcttctgaataagtacatccacatccttaccattatttat 2983244  T
Q  369 aaggtaatccaaaacaacaacataatca 396  Q
    ||||||||||||||||| ||||||||||    
T  2983243 aaggtaatccaaaacaagaacataatca 2983216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 55 - 382
Target Start/End: Complemental strand, 2974699 - 2974371
Alignment:
Q  55 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca 150  Q
    |||||||||||||||||    ||||||| |||||| || ||||||| |||| || |  ||||||||||||||||||||||| ||||||||||| |||| |    
T  2974699 ttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaa 2974600  T
Q  151 taatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaat 250  Q
    ||||||||||| ||||  || |||||| ||| || |||||| |||||| | ||||  | ||||||||  | ||||||||| ||||||||||||| |||||    
T  2974599 taatcacgccttagagcagccttcaacctatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatattagaat 2974500  T
Q  251 atacaacacttttgcaaataccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccac 350  Q
     |  || | |||  | || |||||||||   | | || ||||||||   ||| |||||||||  ||| | ||||||||  ||| ||||||||||||||||    
T  2974499 ttgtaatattttctccaagaccattaaataagatagcaacagaatc---actgtctccaagccaattttgcagtatattgctccgaacaagtatatccac 2974403  T
Q  351 atcggtaccagtatttataaggtaatccaaaa 382  Q
    ||| |||| |||||||||||||||||||||||    
T  2974402 atccgtactagtatttataaggtaatccaaaa 2974371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 69 - 295
Target Start/End: Complemental strand, 2929983 - 2929757
Alignment:
Q  69 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 168  Q
    ||||||||||| ||||||||||||||||  ||| |||| || |||||||||||||||||||||||||||||||||  | | |||||||||||| |||||     
T  2929983 agaacaaactgattgaagtaaagtgagaaaaagtagtaagaatccagcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagta 2929884  T
Q  169 gctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaa 268  Q
    || |||||| ||| || ||||||   |||||| |||| ||  ||||||| || ||||||||| |||| |||||||| ||||| || || |  ||||||||    
T  2929883 gccttcaacctatgccaaggattctaacaaaaagcatttaagtctttgcatagaatagagaaatgaggactgatattagaatgtataatatatttgcaaa 2929784  T
Q  269 taccattaaacctgttggccacagaat 295  Q
     |||||||||| |||| ||||||||||    
T  2929783 aaccattaaacatgttagccacagaat 2929757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 397
Target Start/End: Original strand, 2658575 - 2658714
Alignment:
Q  255 aacacttttgcaaataccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccacatcg 354  Q
    |||| ||||||||| |||| |||||  ||| ||||||||||||||    |||||||||  ||| |||||||| |   |  |||||||||||||||||||     
T  2658575 aacatttttgcaaagaccagtaaacaagttagccacagaatcactg---tctccaagccaattttccagtattttgtttggaacaagtatatccacatcc 2658671  T
Q  355 gtaccagtatttataaggtaatccaaaacaacaacataatcag 397  Q
     ||||||||||||||||||||||||||||| ||||||||||||    
T  2658672 ttaccagtatttataaggtaatccaaaacagcaacataatcag 2658714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 2658377 - 2658476
Alignment:
Q  69 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 168  Q
    ||||||||||||||||| || |||||||  ||| |||| ||||||||||| ||||||| ||| || |||||||||  ||| |||||||||||||||||||    
T  2658377 agaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtg 2658476  T

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Target: chr6; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 2979330 - 2979247
Alignment:
Q  304 tctccaagcatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaaca 387  Q
    |||||||||| ||| |||||||| |  ||| ||||||||||||||||||| ||||| ||||||||||||||||| || ||||||    
T  2979330 tctccaagcaaattttccagtattttgctccgaacaagtatatccacatccgtaccggtatttataaggtaatcgaagacaaca 2979247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 2985742 - 2985688
Alignment:
Q  332 tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaac 386  Q
    ||||||||||||||||| ||||  ||| |||||||||||||||||||||| ||||    
T  2985742 tctgaacaagtatatccgcatccttactagtatttataaggtaatccaaagcaac 2985688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 55 - 397
Target Start/End: Original strand, 34628 - 34971
Alignment:
Q  55 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca 150  Q
    |||||||||||||||||    |||||||| |||||| ||||||||| |||| ||||  |||||||||| |||||||||||||||||||||||||||||||    
T  34628 ttgtactacttgcaagacagaacaaactgattgaagcaaagtgagaacaagtagtaaaattccagcaacggaagcagcagtttgccaaggagttttgcca 34727  T
Q  151 taatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaat 250  Q
    ||||||||||| ||||  || |||||| |||||| |||||||||||||||||||| ||  | |||||  | ||||||||| ||||||||||||| |  ||    
T  34728 taatcacgcctgagagaagccttcaacctattccaaggattactacaaaatgcatttaagtttttgcaaagaatagagaaatgagaactgatattatgat 34827  T
Q  251 atacaacacttttgcaaataccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccac 350  Q
     || |||| ||||||||| || |||||||  ||| |||||||||||   ||| |||||||||| ||||  |||||| ||  || |||||||||||||| |    
T  34828 gtataacatttttgcaaagacgattaaacaagttagccacagaatc---actgtctccaagcaaattagtcagtatttctttccgaacaagtatatccgc 34924  T
Q  351 atcggtaccagtatttataaggtaatccaaaacaacaacataatcag 397  Q
    |||  ||||||||||||||||| ||||||||||||||||||||||||    
T  34925 atccttaccagtatttataaggaaatccaaaacaacaacataatcag 34971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 394
Target Start/End: Original strand, 44567 - 44657
Alignment:
Q  304 tctccaagcatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataat 394  Q
    |||||||||| ||| |||||||| |  ||| ||||| |||||||  ||||  ||||||||||||||||||||||||||| | |||||||||    
T  44567 tctccaagcaaattttccagtattttgctccgaacatgtatatctgcatccttaccagtatttataaggtaatccaaaatagcaacataat 44657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 56 - 396
Target Start/End: Complemental strand, 3339716 - 3339375
Alignment:
Q  56 tgtactacttgca----agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccat 151  Q
    |||||||||||||    ||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||    
T  3339716 tgtactacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtacaattccagcaatggaagcagcagtttgccaaggagtattgcaat 3339617  T
Q  152 aatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaata 251  Q
    |||||||||| |||||||| |||||| ||| || ||||||  |||||||  ||| ||  |||||||| | | ||| ||| |||||||| | |  |||||     
T  3339616 aatcacgcctgagagtggccttcaacctatgccaaggattcttacaaaaatcatttaagtctttgccaagagtagggaaatgagaacttacactagaatg 3339517  T
Q  252 tacaacacttttgcaaataccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccaca 351  Q
     | |||| ||||||||| ||||||||||   || |||||||||||   ||| ||| |||||  ||| || ||||| || |||| ||||||||||||||||    
T  3339516 cataacatttttgcaaagaccattaaacaatttagccacagaatc---actgtctgcaagccaattttctagtatttcgctcttaacaagtatatccaca 3339420  T
Q  352 tcggtaccagtatttataaggtaatccaaaacaacaacataatca 396  Q
    ||  ||| ||||||||||||| ||||||||| | |||||||||||    
T  3339419 tccatactagtatttataaggaaatccaaaaaagcaacataatca 3339375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 384
Target Start/End: Complemental strand, 49619085 - 49618774
Alignment:
Q  69 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 168  Q
    ||||||||||| ||||||||||| |||| |||| ||||  |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||     
T  49619085 agaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccataatcacgcctgagagta 49618986  T
Q  169 gctttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaa 268  Q
    || ||||  |||| || ||||||| |||||||  |||| |  |||||    | || | |||| |||||||||| ||    || |  |||| |||| ||||    
T  49618985 gccttcagtttatgccaaggattattacaaaaaccatc-aagtctttaggaagaagacagaaatgagaactgaaatttatatgtgaaacatttttccaaa 49618887  T
Q  269 taccattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttat 368  Q
     ||||||| ||  ||| |||||||||||   ||| ||| |||||||||||||| ||||  | |||||||||||||||||| ||||  ||||  |||||||    
T  49618886 gaccattatacaagtttgccacagaatc---actgtctgcaagcatattatcctgtattcctctctgaacaagtatatccgcatccctaccgatatttat 49618790  T
Q  369 aaggtaatccaaaaca 384  Q
    ||||||||||||||||    
T  49618789 aaggtaatccaaaaca 49618774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 395
Target Start/End: Complemental strand, 49614107 - 49613787
Alignment:
Q  72 acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggct 171  Q
    |||||||| ||||||||||| ||||  ||| ||||  ||||||||||||||||||||||||||||||||| | |||| ||||||||| || ||||| ||     
T  49614107 acaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaataatcacgtctgagagtcgcc 49614008  T
Q  172 ttcaacttattccgaggattactacaaaatgcatctatttctttgcctaaaatagagaattgagaactgatatcagaatatacaacacttttgcaaatac 271  Q
    |||||  ||| || ||||| |  ||||||  |||  |  ||||  | || ||||||| | |||||||||| ||   ||| |  |||| |||| |||| ||    
T  49614007 ttcaatctatgccaaggatcatgacaaaaaccattcaagtcttcacatagaatagagtactgagaactgaaatacaaatgtgtaacatttttccaaagac 49613908  T
Q  272 cattaaacctgttggccacagaatcactactttctccaagcatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataag 371  Q
     |||||||  ||| |||||||||||||||   || ||||||  |||  ||||||| | | ||||||||||||||||||||||  | |||||||| |||||    
T  49613907 tattaaacaagttagccacagaatcacta---tccccaagccaattcaccagtattttcttctgaacaagtatatccacatccttgccagtattaataag 49613811  T
Q  372 gtaatccaaaacaacaacataatc 395  Q
    | ||||||||||| ||||||||||    
T  49613810 gaaatccaaaacagcaacataatc 49613787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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