View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_29 (Length: 380)
Name: NF7017_low_29
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_29 |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 357
Target Start/End: Complemental strand, 24565265 - 24564914
Alignment:
| Q |
6 |
ttatatattttctaatgtatgatggacatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcat |
105 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24565265 |
ttatatattttctaatttatgatggacatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcat |
24565166 |
T |
|
| Q |
106 |
atttagtcatcttaatatgtatatctttatacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttatta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24565165 |
atttagtcatcttaatatgtatatctttatacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttatta |
24565066 |
T |
|
| Q |
206 |
catttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatgg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24565065 |
catttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaatcagtttttcgatagagaaatgg |
24564966 |
T |
|
| Q |
306 |
agacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564965 |
agacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagt |
24564914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 14165020 - 14164926
Alignment:
| Q |
182 |
atccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt |
276 |
Q |
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| T |
14165020 |
atccttagcaagtgatcattattacacttggttttgaagagacagagaaaaggtgaagaaataggaaaggagttgagcatcaaggccacattttt |
14164926 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 354
Target Start/End: Original strand, 45532792 - 45533138
Alignment:
| Q |
12 |
attttctaatgtatgatggacatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcatatttag |
111 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
45532792 |
attttctaatttatgatggagatttctggttcccgtcaagtatgtttttcataatcgtttatattgtatgtttttgagagaattagtttttcatatttag |
45532891 |
T |
|
| Q |
112 |
tcatcttaatatgtat----atcttta---------------tacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttaccta |
192 |
Q |
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|||||||||| | ||| |||| || ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
45532892 |
tcatcttaatctatatctttatctatacattataagaaaaattacaaaggatgtgaacctttgatctgaatttttgtcattcaaatttcatccttaccaa |
45532991 |
T |
|
| Q |
193 |
gtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttc |
292 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |||||| |
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| T |
45532992 |
atgatctttattacatttggttttgtagagatagagaaaagatcaagaaataggaaaggagtggggcatcaaggccaca---------------tttttc |
45533076 |
T |
|
| Q |
293 |
gatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgc |
354 |
Q |
| |
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||| ||||||||| |||||||||||||| |||| ||||| ||||||||| |||||||||||| |
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| T |
45533077 |
gatggagaaatggtgacatttcggtgtcggtggtagtgaagaagtcacaaagtagtcggtgc |
45533138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 76 - 318
Target Start/End: Complemental strand, 44339327 - 44339074
Alignment:
| Q |
76 |
tttatgtttttgagagaattagtttttcatatttagtcatcttaatatgtat----atctttatac-------aaaggatgcggacctttgatgtgaatt |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| || ||||| | ||| |||| || || |||||||| ||||||||||| | ||| |
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| T |
44339327 |
tttatgtttttgagagaattagtttttcatattaagtaattttaatctatatctttatctatacactataacaaaaggatgtggacctttgatttcgatt |
44339228 |
T |
|
| Q |
165 |
tttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaa |
264 |
Q |
| |
|
||| |||||| ||||||||||||||| |||||||| | ||||| ||||| ||||||||| |||||||||||||||||||||||||||| | | ||||| |
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| T |
44339227 |
tttatcattccaatttcatccttaccaagtgatctgttttacacttggttttgtagagacagagaaaagatgaagaaataggaaaggaggggagaatcaa |
44339128 |
T |
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| Q |
265 |
ggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtg |
318 |
Q |
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||||||||||||||||| | | ||| | ||||||||| | |||||||||||||| |
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| T |
44339127 |
ggccacatttttcatcagcaactttattgatagagaagtcgagacatttcggtg |
44339074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 138 - 317
Target Start/End: Original strand, 44335720 - 44335899
Alignment:
| Q |
138 |
aaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatga |
237 |
Q |
| |
|
|||||||| ||||||||||| | |||||| |||||| ||||||||||||||| |||||||| | ||||| ||||| ||||||||| |||||||||||| |
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|
| T |
44335720 |
aaaggatgtggacctttgattttgatttttatcattccaatttcatccttaccaagtgatctgttttacacttggttttgtagagacggagaaaagatga |
44335819 |
T |
|
| Q |
238 |
agaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggt |
317 |
Q |
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||||||||||||||| | |||||||||||||||||||||||| | | ||| | ||||||||| | ||||||||||||| |
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| T |
44335820 |
agaaataggaaaggaggggagcatcaaggccacatttttcatcagcaactttattgatagagaagtcgagacatttcggt |
44335899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 318
Target Start/End: Original strand, 29633314 - 29633485
Alignment:
| Q |
147 |
ggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaatagg |
246 |
Q |
| |
|
|||||||| || || |||||| |||||| |||| || |||| | ||||||| |||||||| ||||| ||| |||| | |||||| || |||||||||| |
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| T |
29633314 |
ggacctttaatctggatttttatcattccaattctattcttagcaagtgatcgttattacacttggtcttgaagaggcaaagaaaatataaagaaatagg |
29633413 |
T |
|
| Q |
247 |
aaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtg |
318 |
Q |
| |
|
||| || ||||| ||||| |||| ||||||| | |||||||| |||||| ||||||| || |||| |||| |
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|
| T |
29633414 |
aaacgagtagggtatcaatgccatgtttttcaactgccagttttgcgatagggaaatggggatattttggtg |
29633485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 44335587 - 44335679
Alignment:
| Q |
6 |
ttatatattttctaatgtatgatggacatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcat |
105 |
Q |
| |
|
|||||||||||||||| || |||||| |||| | ||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||| |
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| T |
44335587 |
ttatatattttctaatttacgatggatatttatcgttcccttcgagtatgtttttc----------atattttatgtttttgagagaattaatttttcat |
44335676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 40389260 - 40389416
Alignment:
| Q |
162 |
atttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcat |
261 |
Q |
| |
|
|||||| |||||| |||| || |||| | ||||||| |||||||| ||| | ||| |||| | |||||| || ||||||||||||| || ||||| || |
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|
| T |
40389260 |
atttttatcattccaattctattcttagcaagtgatcgttattacacttgatcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtat |
40389359 |
T |
|
| Q |
262 |
caaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtg |
318 |
Q |
| |
|
||| |||| ||||||| | |||||||| ||||| ||||||| ||||||| |||| |
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|
| T |
40389360 |
caatgccatgtttttcaactgccagttttgcgatatggaaatggggacattttggtg |
40389416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 19190097 - 19190196
Alignment:
| Q |
23 |
tatgatggacatttctggttcccttcaagtatgtttttc-agaattgtttataatttatgtttttgagagaattagtttttcatatttagtcatcttaat |
121 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190097 |
tatgattgacatttctggttcccttcaagtatgtttttttagaattgtttatattttatgtttttgagagaattagtttttcatatttagtcatcttaat |
19190196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 16257 - 16351
Alignment:
| Q |
182 |
atccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt |
276 |
Q |
| |
|
||||||| | ||||||| |||||||| ||||| ||| ||||| ||||||||| ||||||||||| |||||| | | ||||||||||||||||||| |
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|
| T |
16257 |
atccttagcaagtgatcattattacacttggttttgaagagacagagaaaaggtgaagaaatagaaaaggagttgagcatcaaggccacattttt |
16351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 23096260 - 23096176
Alignment:
| Q |
192 |
agtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt |
276 |
Q |
| |
|
||||||| |||||||| ||||| ||| |||||| |||||||| ||||||||||||||||| | |||||||||||| |||||||| |
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|
| T |
23096260 |
agtgatcattattacacttggttttgaagagatggagaaaaggtgaagaaataggaaaggggtggggcatcaaggctacattttt |
23096176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 24867524 - 24867465
Alignment:
| Q |
193 |
gtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaagga |
252 |
Q |
| |
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||||| ||||||| | ||||| ||||||||| || ||||||| ||||||||||||||||| |
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|
| T |
24867524 |
gtgatttttattagacttggttttgtagagacagtgaaaagaagaagaaataggaaagga |
24867465 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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