View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_3 (Length: 634)
Name: NF7017_low_3
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 156 - 616
Target Start/End: Complemental strand, 45681824 - 45681368
Alignment:
| Q |
156 |
cagtccttcccatacatgcatgtttcttgtacaacattttttcaaacaagaattaaggtggcaccttaccctctatcctatggctgcgaatctttatctc |
255 |
Q |
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| T |
45681824 |
cagtccttcccatacatgcatgtttcttgtacaacattttttcaaacaagaattaaggtggcaccttaccctctat-----ggctgcgaatctttatctc |
45681730 |
T |
|
| Q |
256 |
tatatttatatacagactaaacgttaatcataagcaagcatatttatttattgtcaaaacttaaaacaattctgataattcatttgtcctggaaacatag |
355 |
Q |
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| T |
45681729 |
tatatttatatacagactaaacgttaatcataagcaagcatatttatttattgtcaaaacttaaaacaattctgataattcatctgtcctggaaacatag |
45681630 |
T |
|
| Q |
356 |
acatcaattttgttttctgggaaggnnnnnnnnnntattgcttcaattatgtagctgatcaaattc---nnnnnnnnngtcacaaataattaaatactta |
452 |
Q |
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| T |
45681629 |
acatcaattttgttttctgggaaggaaaaaaaaa--attgcttcaattatgtagctgatcaaattcttttttttttttgtcacaaataattaaatactta |
45681532 |
T |
|
| Q |
453 |
cccaattgaatatttttgcggtgaatatccataggacaacgaagccgacatatattataggcatatatatacagcaagagcaatggagcattacattttt |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45681531 |
cccaattgaatatttttgcggtgaatatccataggacaacgaagccgatatatattataggcatatatatacagcaagagcaatggagcattacattttt |
45681432 |
T |
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| Q |
553 |
tgttctgtcaataaaatacaagttacatttctattttaatatttggagtttgacttagctgaac |
616 |
Q |
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| T |
45681431 |
tgttctgtcaataaaatacaagttacatttttattttaatatttggagtttgacttagctgaac |
45681368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 45681993 - 45681878
Alignment:
| Q |
22 |
aagtgattttggattagatttgtctcaactattgtctgtcttgatt-----attaggacggttcaatttgagaacttgacatacctattgactcctacct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45681993 |
aagtgattttggattagatttgtctcaactattgtctgtcttgatttgattattaggacggttcaatttgagaacttgacatacctattgactcctacct |
45681894 |
T |
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| Q |
117 |
tcaatgactaaggttc |
132 |
Q |
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|||||||||||||||| |
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| T |
45681893 |
tcaatgactaaggttc |
45681878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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