View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_32 (Length: 353)
Name: NF7017_low_32
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 28474304 - 28474496
Alignment:
| Q |
1 |
caaaatgataatgttaatgaacatgaaactcaggtatgtgtgtacattttctaaattaaattacacaccttgtaattaatggtaccttcaagtgctaatt |
100 |
Q |
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| T |
28474304 |
caaaatgataatgttaatgaacatgaaactcaggtatgtgtgtacattttctaaattaaattacacaccttgtaattaatggtaccttcaagtgctaatt |
28474403 |
T |
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| Q |
101 |
gtggtattttgacattgttcatgagatactacttaaattaattgagcctctctataatgtgaatgtatttgaaattatacacatgcaagtgta |
193 |
Q |
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| T |
28474404 |
gtggtattttgacattgttcatgagatactacttaaattaattgagcctctctataatgtgaatgtatttgaaattatacacatgcaagtgta |
28474496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 28474554 - 28474642
Alignment:
| Q |
253 |
aagtaattatcaattgtaatttgatattgttatgaaattattttcatgaatttctattttgtatattagaactggtaccaggtgatgtc |
341 |
Q |
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| T |
28474554 |
aagtaattatcaattgtaatttgatattgttatgaaattattttcatgaatttctattttgtatattagaactggtaccaggagatgtc |
28474642 |
T |
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