View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7017_low_34 (Length: 344)
Name: NF7017_low_34
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2350930 - 2351254
Alignment:
| Q |
1 |
gctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2350930 |
gctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcgtgatggaaatggag |
2351029 |
T |
|
| Q |
101 |
agaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2351030 |
agaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgtt |
2351129 |
T |
|
| Q |
201 |
accacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2351130 |
gccacacgcggtgacagaggatgtgctttttaacggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgt |
2351229 |
T |
|
| Q |
301 |
gtttgggaggatccaatggagttta |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2351230 |
gtttgggaggatccaatggagttta |
2351254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 325
Target Start/End: Original strand, 2303355 - 2303678
Alignment:
| Q |
2 |
ctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggaga |
101 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||||| |||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
2303355 |
ctttgcaatggattatggcgaatttggttaagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtggtgatgagaatggaga |
2303454 |
T |
|
| Q |
102 |
gaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgtta |
201 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
2303455 |
gaaggaggaagtgaaagaggaagaattgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatccaccggggcattttctgttg |
2303554 |
T |
|
| Q |
202 |
ccacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtg |
301 |
Q |
| |
|
||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
2303555 |
ccacacgcggtgaaagaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctggcggagatggggtgggatcctcgtg |
2303654 |
T |
|
| Q |
302 |
tttgggaggatccaatggagttta |
325 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2303655 |
tttgggaggatccaatggagttta |
2303678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2326909 - 2327233
Alignment:
| Q |
1 |
gctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggag |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| | |||||| |||||| || || |
|
|
| T |
2326909 |
gctttgcattggattatggcgaatttggtgaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggtggtgatggtgttgtag |
2327008 |
T |
|
| Q |
101 |
agaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgtt |
200 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
2327009 |
agaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccagggcattttgtgtt |
2327108 |
T |
|
| Q |
201 |
accacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgt |
300 |
Q |
| |
|
|| || || |||| || |||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
2327109 |
gcctcatgcagtgagcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgt |
2327208 |
T |
|
| Q |
301 |
gtttgggaggatccaatggagttta |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2327209 |
gtttgggaggatccaatggagttta |
2327233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2321055 - 2321380
Alignment:
| Q |
1 |
gctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggag |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| |||||| | |||||||||| | ||||| ||||||| |
|
|
| T |
2321055 |
gctttgcagtggattatggcgaatttggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggttagtgatgacaatggag |
2321154 |
T |
|
| Q |
101 |
agaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc-ggggcataatgtgt |
199 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||| ||| |||| || ||||||||||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
2321155 |
agaaggaggaagtgaaagaggaaaacttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatccaccaggggcattttgtgt |
2321254 |
T |
|
| Q |
200 |
taccacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcg |
299 |
Q |
| |
|
| ||||| |||||| |||||||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| || | ||||||| |||||||||||| |
|
|
| T |
2321255 |
tggcacacacggtgaaagaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcg |
2321354 |
T |
|
| Q |
300 |
tgtttgggaggatccaatggagttta |
325 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2321355 |
tgtttgggaggatccaatggagttta |
2321380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2330624 - 2330948
Alignment:
| Q |
1 |
gctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggag |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||| || |||| ||||||||| ||||||| |||||||||||| |||| ||||| |
|
|
| T |
2330624 |
gctttgcaatggattatggcgaatttggtgaagtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtggcgatgatgctggag |
2330723 |
T |
|
| Q |
101 |
agaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgtt |
200 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||||| |||| |||| || |||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
2330724 |
agaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcatttcgtgtt |
2330823 |
T |
|
| Q |
201 |
accacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgt |
300 |
Q |
| |
|
|| ||||| |||| ||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
2330824 |
gcctcacgcagtgagcgaggatgtggttttgaatggttatttggtgcctaaagatgggacggtgaattttatggttgcagagatggggttggaccctcgt |
2330923 |
T |
|
| Q |
301 |
gtttgggaggatccaatggagttta |
325 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
2330924 |
gtttgggaggatccaatggaattta |
2330948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 325
Target Start/End: Original strand, 2293743 - 2294065
Alignment:
| Q |
3 |
tttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagag |
102 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||||||||| || ||||| |||||||||||||| |||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
2293743 |
tttgcagtggattatggcgaatgtagtgaagtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagag |
2293842 |
T |
|
| Q |
103 |
aaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttac |
202 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| | | ||| | |
|
|
| T |
2293843 |
aaggaggaagtgaaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccggggaaatttccgttgc |
2293942 |
T |
|
| Q |
203 |
cacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgt |
302 |
Q |
| |
|
|||||||||||| |||||||||| |||| | |||||||||||||||||||| |||||||| ||||| || |||| ||||||| || |||||||||||| |
|
|
| T |
2293943 |
cacacgcggtgaaagaggatgtggttttggacggttatttggtgcctaaaaacgggacggtgaatttcttgctggcggagatggcgttggatcctcgtgt |
2294042 |
T |
|
| Q |
303 |
ttgggaggatccaatggagttta |
325 |
Q |
| |
|
||||||||| || ||||||||| |
|
|
| T |
2294043 |
ttgggaggacccgttggagttta |
2294065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 2310081 - 2310396
Alignment:
| Q |
10 |
tggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtgg |
109 |
Q |
| |
|
||||||||||| ||| ||||||||||||| || ||| | |||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
2310081 |
tggattatggcgaatgtggtgaagtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggagg |
2310180 |
T |
|
| Q |
110 |
aagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgc |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||| | | ||| |||||||| |
|
|
| T |
2310181 |
aagtgaaagaggaagacttgcagaaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatccatcggggaaatttccgttgccacacgc |
2310280 |
T |
|
| Q |
210 |
ggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggag |
309 |
Q |
| |
|
||||| |||||||||| |||| | |||||||||||||||||||| |||||||| ||||| | |||| ||||||| || ||||| ||||||||||||| |
|
|
| T |
2310281 |
ggtgaaagaggatgtggttttggacggttatttggtgcctaaaaacgggacggtgaatttctttctggcggagatggcgttggatcgtcgtgtttgggag |
2310380 |
T |
|
| Q |
310 |
gatccaatggagttta |
325 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
2310381 |
gacccattggagttta |
2310396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 26506746 - 26506863
Alignment:
| Q |
202 |
ccacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtg |
301 |
Q |
| |
|
||||| || ||||| ||||||||| ||||||| ||||| |||||||||||||||||||| || |||||||||||||||||| | ||||||||||| ||| |
|
|
| T |
26506746 |
ccacatgcagtgaccgaggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcagaggttgggtgggatccaagtg |
26506845 |
T |
|
| Q |
302 |
tttgggaggatccaatgg |
319 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
26506846 |
tttgggaggatcccatgg |
26506863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 325
Target Start/End: Original strand, 41127050 - 41127260
Alignment:
| Q |
115 |
aaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtga |
214 |
Q |
| |
|
||||||||||| |||||||| || ||||| || |||||| ||||||||||| ||||| |||| ||||||||||| |||||| || || ||||||| |
|
|
| T |
41127050 |
aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggcactttgtgttgccccatgcggtga |
41127149 |
T |
|
| Q |
215 |
cagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatcc |
314 |
Q |
| |
|
||||||||| |||| | ||||| ||| |||||||||||| | || ||||| ||||||||||| || ||| |||| ||| |||||||||| ||||| |
|
|
| T |
41127150 |
aggaggatgtggttttcgacggttacttgctgcctaaaaatgtggtagtgaatttcatggtggcagacatagggagggaccctagtgtttgggaagatcc |
41127249 |
T |
|
| Q |
315 |
aatggagttta |
325 |
Q |
| |
|
| ||||||||| |
|
|
| T |
41127250 |
attggagttta |
41127260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 26494726 - 26494780
Alignment:
| Q |
227 |
tttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcaga |
281 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
26494726 |
ttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga |
26494780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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