View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7017_low_36 (Length: 337)
Name: NF7017_low_36
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_36 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0178 (1 HSPs) |
| | |
|
| [»] scaffold0470 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 278
Target Start/End: Complemental strand, 47472824 - 47472669
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttg----atgttt--aaaatgatatccttagaattacctacggttttgtccgt |
220 |
Q |
| |
|
||||||||||| | |||||||||| ||||||||||| ||| |||||||| |||||| |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
47472824 |
aaacaatgataggttttagtgacagccgcaaccgtaggtagaggtccttagataatgtttttaaaatggtatccttagaattacctacggtttagtccgt |
47472725 |
T |
|
| Q |
221 |
aggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagacgggcacattt |
278 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||| |
|
|
| T |
47472724 |
aggtaaaggtagaaaacatggagtga--gccatttgtcaatgatagacgggcacattt |
47472669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 51261436 - 51261316
Alignment:
| Q |
129 |
acaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggtaa |
226 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||| ||| ||| |||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
51261436 |
acaatgataagttttaatgataaccgcaaccgtaggtagagggccttaatgtttttaaaatgatatctttagaattacctacggttttgtgcgtaggtaa |
51261337 |
T |
|
| Q |
227 |
aggtagaaaacatgtagtgac |
247 |
Q |
| |
|
|||| |||| ||||| |||| |
|
|
| T |
51261336 |
aggtgaaaaatatgtattgac |
51261316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 46279306 - 46279421
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| |||||||||| | || ||| |||||| | |||||||||||||||||| |||| ||||||||| |
|
|
| T |
46279306 |
aaacaatgataaggtttagtgacagtcacaaccgtaggtataggtccataatatttttaaaatggtctccttagaattacctacgattttttccgtaggt |
46279405 |
T |
|
| Q |
225 |
aaaggtagaaaacatg |
240 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
46279406 |
aaaggtggaaaacatg |
46279421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 47041400 - 47041268
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaacc-gtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtagg |
223 |
Q |
| |
|
|||||| |||||| |||| ||||| |||||||| ||| ||| |||||| | || ||| |||||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
47041400 |
aaacaacgataagttttaatgacagccgcaacccgtaggtagaggtccataatatttttaaaatggtctccttagaattacctacggttttttccgtagg |
47041301 |
T |
|
| Q |
224 |
taaaggtagaaaacatgtagtgaccgccatttg |
256 |
Q |
| |
|
||||||| ||||||||| |||||| | |||||| |
|
|
| T |
47041300 |
taaaggtggaaaacatgcagtgacagtcatttg |
47041268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 20844685 - 20844542
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttga--tgtttaaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||| | |||| |||||||||| ||||||||||| | | |||||| | | | ||||||||| | ||||||||||||||||||||||| ||| ||||| |
|
|
| T |
20844685 |
aaacaacggtaagttttagtgacagccgcaaccgtaggaagaggtccataaattttttaaaatggtctccttagaattacctacggttttttccataggt |
20844586 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||||| ||||||||| | |||| | |||||| |||||| |||| |
|
|
| T |
20844585 |
aaaggtggaaaacatgcaatgacagtcatttgacaatgacagac |
20844542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 9741031 - 9740911
Alignment:
| Q |
128 |
aacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaa-ttacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||| ||| |||||| | |||||| |||||| | ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
9741031 |
aacaatgataagttttagtgacagtcgtaaccgtaggtagaggtccataatgtttttaaaatggtctccttagaaattacctacggttttgtccttaggt |
9740932 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtg |
245 |
Q |
| |
|
||| || ||||||||| |||| |
|
|
| T |
9740931 |
aaaagtggaaaacatgcagtg |
9740911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 30382043 - 30381921
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatg--tttaaaatgatatccttagaa-ttacctacggttttgtccgtagg |
223 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||| |||||||| ||||| ||||||||| | |||||| || |||||||||||||| |||||| | |
|
|
| T |
30382043 |
aaacaacgataagttttagtgacagccgcaaccgtaggtataggt-tatgatgtttttaaaatggtctccttataatttacctacggttttttccgtatg |
30381945 |
T |
|
| Q |
224 |
taaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
||||||| |||||| ||||||||| |
|
|
| T |
30381944 |
taaaggtggaaaacttgtagtgac |
30381921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 33776772 - 33776630
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||| ||| ||||| | |||||| |||| | | |||||||||||||||| |||||| ||||||||| |
|
|
| T |
33776772 |
aaacaacgataagttttagtgacagccgcaaccgtaggtagaggtcata-atgtttttaaaacggtctccttagaattacctatggttttttccgtaggt |
33776674 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||||| |||||||| ||||| | |||||| |||||| |||| |
|
|
| T |
33776673 |
aaaggtggaaaacatacggtgacagtcatttggcaatgacagac |
33776630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 46986799 - 46986676
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatg--tttaaaatgatatccttagaattacctacg-gttttgtccgtagg |
223 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||| ||| |||||| ||| ||||||||| | |||||||||||||||||| |||| |||||||| |
|
|
| T |
46986799 |
aaacaacgataagttttagtgacagccgcaaccgtaggtagaggtccaaaatgtttttaaaatggtctccttagaattacctacgatttttttccgtagg |
46986700 |
T |
|
| Q |
224 |
taaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
||||| | ||||||||| |||||| |
|
|
| T |
46986699 |
taaagatggaaaacatgcagtgac |
46986676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 15667451 - 15667338
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||| ||| ||||| | |||||| |||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
15667451 |
aaacaataataagttttagtgag--ccgcaaccgtaggtagaggtcaataatgtttttaaaatggtctccttagaattacctacgattttgtccgtaggt |
15667354 |
T |
|
| Q |
225 |
aaaggtagaaaacatg |
240 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
15667353 |
aaaggtgcaaaacatg |
15667338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 24130695 - 24130738
Alignment:
| Q |
197 |
agaattacctacggttttgtccgtaggtaaaggtagaaaacatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24130695 |
agaattacctacggttttgtccgtaggtaaaggtggaaaacatg |
24130738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 53682296 - 53682213
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||| ||| ||||||||||| |||||| || |||||| | |||||| |||||| |
|
|
| T |
53682296 |
tttaaaatggtcttcttagaattacctacggttttttccataggtaaaggtggaaaacttgcagtgacagtcatttggcaatga |
53682213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 22526947 - 22526850
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagacgggcacatt |
277 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||||| ||| |||||||| ||||||||| |||||| |||||| ||||||| |||| || ||||| |
|
|
| T |
22526947 |
tttaaaatgatatctttataattacctacaattttgtttgtaagtaaaggtggaaaacatgcagtgacaaccattttccaatgacagacaggaacatt |
22526850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 3858889 - 3858951
Alignment:
| Q |
195 |
ttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgcc |
258 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
3858889 |
ttagaattacctacg-ttttgtccgtagataaaggtggaaaacatgtaatgacaaccatttgcc |
3858951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 16416040 - 16415897
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||| |||||| |||||||||| | |||||| || ||| | |||| | |||||| |||||| | |||||||||||||||| | |||| || ||||| |
|
|
| T |
16416040 |
aaacaacgataagttttagtgacagctgcaaccataggtagaagtccataatgtttttaaaatggtctccttagaattacctatgattttttctgtagga |
16415941 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||||| |||||||| | |||| | |||||| |||||| |||| |
|
|
| T |
16415940 |
aaaggtggaaaacatacactgacagtcatttggcaatgacagac |
16415897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 18517014 - 18516871
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||| |||||| |||||||||| | |||||| || ||| | |||| | |||||| |||||| | |||||||||||||||| | |||| || ||||| |
|
|
| T |
18517014 |
aaacaacgataagttttagtgacagctgcaaccataggtagaagtccataatgtttttaaaatggtctccttagaattacctatgattttttctgtagga |
18516915 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||||| |||||||| | |||| | |||||| |||||| |||| |
|
|
| T |
18516914 |
aaaggtggaaaacatacactgacagtcatttggcaatgacagac |
18516871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 55194415 - 55194327
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagacg |
269 |
Q |
| |
|
||||||||| | |||||| | ||||||| | ||||||||||||||||| || |||||||||| ||| | ||||||| |||||| ||||| |
|
|
| T |
55194415 |
tttaaaatggtctccttatagttacctatg-ttttgtccgtaggtaaaagtggaaaacatgtggtggcaaccatttgacaatgacagacg |
55194327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 32380283 - 32380426
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||| ||| |||||| | |||||| |||||| | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
32380283 |
aaacaatgataagttttagtgacagccgtaaccgtaggtaaaggtccattatgtttttaaaatggtctccttagaattacctacagttttgtccgtaggt |
32380382 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
32380383 |
aaaggtggaaaacatgtagtgacgaccatttggcaatgacagac |
32380426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 135 - 268
Target Start/End: Original strand, 49868120 - 49868254
Alignment:
| Q |
135 |
ataaggtttagtgacaaccgcaaccgtatgtataggtccttg-atgtttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtaga |
233 |
Q |
| |
|
||||| |||||||||| ||||||| ||| ||| ||||| | || ||||||||| | ||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
49868120 |
ataagttttagtgacagccgcaacggtaggtagaggtcataatatttttaaaatggtctccttagaattacctacggttttttccgtaggtaaaggtgga |
49868219 |
T |
|
| Q |
234 |
aaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||| || ||||| | |||||| |||||| |||| |
|
|
| T |
49868220 |
aaacttgcagtgatagacatttggcaatgacagac |
49868254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 29639861 - 29639949
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||| ||||||||||||||| |||||| || |||||| | |||||| |||||| |||| |
|
|
| T |
29639861 |
tttaaaatggtctacttagaattacctacggttttttccgtaggtaaaggtggaaaacttgcagtgacggtcatttggcaatgacagac |
29639949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 30559795 - 30559878
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||||||| ||||||||||| ||||||||| | |||| |||||||| |||||| |
|
|
| T |
30559795 |
tttaaaatggtctccttagaattacctatggttttgtcgataggtaaaggtggaaaacatgcaatgacagccatttgacaatga |
30559878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 14201520 - 14201588
Alignment:
| Q |
194 |
cttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
14201520 |
cttagaattac-tacggttttttccgcaggtaaaggtggaaaacatgtagtgacagccatttgacaatga |
14201588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 31637606 - 31637518
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| ||||| | |||||||||| ||||| |||||| |||||| |||| |
|
|
| T |
31637606 |
tttaaaatggtatccttagaattacctacggttttgtttgtagttaaagatggaaaacatgttgtgacaaccatttaacaatgatagac |
31637518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 6078616 - 6078704
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| ||| || ||||||| |||||| || |||||| | |||||| |||||| |||| |
|
|
| T |
6078616 |
tttaaaatggtctccttagaattacctacggttttttcctaagataaaggtggaaaacttgcagtgacagtcatttgacaatgacagac |
6078704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 52754548 - 52754635
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
||||||||| | || ||||||||||||||| |||| |||||||||||| || |||||||||||||||| | || ||| |||||| |||| |
|
|
| T |
52754548 |
tttaaaatggtctctttagaattacctacgttttt-tccgtaggtaaatgtggaaaacatgtagtgacagtcaattggcaatgacagac |
52754635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 49465911 - 49465979
Alignment:
| Q |
194 |
cttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
|||||||||||||||| |||| || |||||||| || |||||||||||||||| |||||||| |||||| |
|
|
| T |
49465911 |
cttagaattacctacgtttttttca-taggtaaatgtggaaaacatgtagtgacagccatttgacaatga |
49465979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 50682816 - 50682863
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaa |
227 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
50682816 |
tttaaaatggtatccttataattacctacgattttgtccataggtaaa |
50682863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 24903697 - 24903644
Alignment:
| Q |
217 |
ccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagacgg |
270 |
Q |
| |
|
|||||||||||||| |||||||||| |||| |||||||| || |||||||||| |
|
|
| T |
24903697 |
ccgtaggtaaaggtggaaaacatgtcgtgaaagccatttggcattgagagacgg |
24903644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 435688 - 435835
Alignment:
| Q |
133 |
tgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt-aaaatgatatccttagaattacctacggttttgtccgtaggtaaaggta |
231 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| |||||||| |||||| |||||| |||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
435688 |
tgataagttttagtgacaaccgcaaccgtaggtagaggtccttaatgttttaaaatggtatccttaaaattacctacagttttgtccgtaggtaaaggtg |
435787 |
T |
|
| Q |
232 |
gaaaacatgtagtgaccgccatttgccaatgagagacgggcacatttc |
279 |
Q |
| |
|
|||||| || | | || ||||||| |||||| | ||||||||||||| |
|
|
| T |
435788 |
gaaaacgtgcaattacaaccatttgacaatgacatacgggcacatttc |
435835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 8036116 - 8036184
Alignment:
| Q |
240 |
gtagtgaccgccatttgccaatgagagacgggcacatttctgtttcaagtcgttgagaataatacacaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8036116 |
gtagtgaccgccatttgccaatgagagacgggcaaatttctgtttcaagtcgttgagaataatacacaa |
8036184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 12181258 - 12181402
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatg--tttaaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| | |||||||||| | ||| ||||||||| | | ||| ||||||| ||| ||||||||||||||| |
|
|
| T |
12181258 |
aaacaatgataagatttagtgacagccgcaaccgcaggtataggtccgtaatgtttttaaaatggtctacttggaattacatac-gttttgtccgtaggt |
12181356 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatgagagacgg |
270 |
Q |
| |
|
|||||| ||||| ||| || ||| ||||||| |||||| |||||| |
|
|
| T |
12181357 |
aaaggtggaaaatatgcagcgacatccatttgacaatgacagacgg |
12181402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 7990324 - 7990464
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgc-aaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacgg-ttttgtccgtag |
222 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||| || ||| ||||| | |||||| |||||| | ||||||||||||||||||| |||| ||||||| |
|
|
| T |
7990324 |
aaacaatgataagttttagtgacagccgccaaccataggtagaggtctataatgtttttaaaatggtctccttagaattacctacggtttttttccgtag |
7990423 |
T |
|
| Q |
223 |
gtaaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
||||| || ||||||||| |||| | | |||||| |||||| |
|
|
| T |
7990424 |
gtaaatgtggaaaacatgcagtggcagtcatttggcaatga |
7990464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 12648921 - 12648779
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||| |||||||| |||||||||| || |||||||| ||| ||||| | |||||| |||||| | |||||| ||| |||||| |||||||||||||| |
|
|
| T |
12648921 |
aaaccatgataagttttagtgacagccacaaccgtaggtagtggtccataatgtttttaaaatggtctccttataataacctaca-ttttgtccgtaggt |
12648823 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
||| || ||||||||| |||||| |||||| |||||| |||| |
|
|
| T |
12648822 |
aaacgtggaaaacatgcagtgacaaacatttggcaatgacagac |
12648779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 2226503 - 2226456
Alignment:
| Q |
192 |
tccttagaattacctacggttttgtccgtaggtaaaggtagaaaacat |
239 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
2226503 |
tccttagaattacctacagttttttccgtaggtaaaggtggaaaacat |
2226456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 19576522 - 19576379
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||| ||| |||||| | |||||| |||||| | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
19576522 |
aaacaacgataagttttagtgacagccgcaaccgtaggtagaggtccataatgtttttaaaatggtctccttagaattacctacggttttttccgtaggt |
19576423 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||||| ||||||||| | |||| | |||||| |||||| |||| |
|
|
| T |
19576422 |
aaaggtggaaaacatgcaatgacagtcatttggcaatgacagac |
19576379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 263
Target Start/End: Original strand, 23244892 - 23245026
Alignment:
| Q |
131 |
aatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggtaaag |
228 |
Q |
| |
|
||||||||| |||||||||| ||||| |||| || |||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23244892 |
aatgataagttttagtgacagtcgcaatcgtagatagaggtccttaatgtttttaaaatggtatgcttagaattacctacggttttgtccgtaggtaaag |
23244991 |
T |
|
| Q |
229 |
gtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
|| ||||||||| ||||| ||||||| |||||| |
|
|
| T |
23244992 |
gtggaaaacatgcagtgataaccatttgacaatga |
23245026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 40813273 - 40813162
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||| ||| |||||||| |||||| |||||| |||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
40813273 |
aaacaatgataagttttagcgacagccgcaaccgtaggtagaggtccttaatgtttttaaaatggtatctttagaattacctacgattttgtccgcaggt |
40813174 |
T |
|
| Q |
225 |
aaaggtagaaaa |
236 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
40813173 |
aaaggtggaaaa |
40813162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 263
Target Start/End: Complemental strand, 8911705 - 8911567
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtcctt--gatgtttaaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||||| || |||||| | || ||||||||| | || |||||||||||||||||||| | ||||||| |
|
|
| T |
8911705 |
aaacaacgataagttttagtgaccgccgcaaccgtagatagaggtccataatatttttaaaatggtctcattagaattacctacggtttttttcgtaggt |
8911606 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
|||||| ||||||||| |||||| | |||||| |||||| |
|
|
| T |
8911605 |
aaaggtggaaaacatgcagtgacagtcatttggcaatga |
8911567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 39021536 - 39021639
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||| ||| || ||| |||||||| |||||| | ||||||||||||||||||||||| ||||||| | |
|
|
| T |
39021536 |
aaacaacgataagttttagtgacagtcgcaaccgtaggtagagatccatgatgtttttaaaatggtctccttagaattacctacggttttttccgtagtt |
39021635 |
T |
|
| Q |
225 |
aaag |
228 |
Q |
| |
|
|||| |
|
|
| T |
39021636 |
aaag |
39021639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 4785248 - 4785133
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||||||||| | |||||||| ||| |||||| | |||||| |||||| ||||||||||||| ||||||||| |||||| || |
|
|
| T |
4785248 |
aaacaatgataagttttagtgacagctacaaccgtaggtagaggtccataatgtttttaaaatggactccttagaattacttacggttttttccgtatgt |
4785149 |
T |
|
| Q |
225 |
aaaggtagaaaacatg |
240 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
4785148 |
aaaggtgaaaaacatg |
4785133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 3052778 - 3052703
Alignment:
| Q |
192 |
tccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| || |||||||||| ||||| || ||||| |||||| |||| |
|
|
| T |
3052778 |
tccttagaattacctacgttttt-tccgtaggtaaatgtggaaaacatgtggtgacagctatttgacaatgacagac |
3052703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 27169531 - 27169668
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatg--tttaaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||| ||| | | || | ||| ||||||||| | |||||||| |||| ||| ||||||| |||||| |
|
|
| T |
27169531 |
aaacaatgataagttttagtgacagccgcaatcgtaggtagaagaccataatgtttttaaaatggtctccttagagttacatac-gttttgtttgtaggt |
27169629 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
||| || ||||||||| |||||| ||||||| |||||| |
|
|
| T |
27169630 |
aaaagtggaaaacatgcagtgacaaccatttgacaatga |
27169668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 15731333 - 15731455
Alignment:
| Q |
127 |
aaacaatga-taaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtagg |
223 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||| ||| |||||| | || ||| |||||| || ||||||||||| | ||||| |||||||| |
|
|
| T |
15731333 |
aaacaatgaataagttttagtgacagccgcaaccgtaggtagaggtccataatatttttaaaatggcctc-ttagaattaccaatggtttcgtccgtagt |
15731431 |
T |
|
| Q |
224 |
taaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
||||||| ||||||||| |||||| |
|
|
| T |
15731432 |
taaaggtggaaaacatgcagtgac |
15731455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 1705030 - 1705078
Alignment:
| Q |
217 |
ccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgaga |
265 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||| |||||||| |
|
|
| T |
1705030 |
ccgtaggtaaaggtagaaaacatattgtgatagccatttggcaatgaga |
1705078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 24592389 - 24592528
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttga---tgtttaaaatgatatccttagaattacctacggttttgtccgtagg |
223 |
Q |
| |
|
|||||||||||| |||||||||| |||||| |||| ||| |||||||| | | ||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
24592389 |
aaacaatgataaattttagtgacagccgcaatcgtaggtagaggtccttaaatgtttttaaaatggtatccttagaattacctacggttttgtccctagg |
24592488 |
T |
|
| Q |
224 |
taaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
||||| | ||||||||| |||||| ||||||| |||||| |
|
|
| T |
24592489 |
taaagatggaaaacatgcagtgacaaccatttgacaatga |
24592528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 41504897 - 41504775
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||||||||| | ||||||||| ||| | |||| | |||||| |||||| | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
41504897 |
aaacaatgataagttttagtgacagctgcaaccgtaggtagatgtccgtaatgtttttaaaatggtctccttagaattacctacggttttttccgtaggt |
41504798 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
41504797 |
aaaggtggaaaacatgcagtgac |
41504775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 263
Target Start/End: Complemental strand, 22729506 - 22729372
Alignment:
| Q |
131 |
aatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggtaaag |
228 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| | | |||||||| |||||| |||||| |||| ||||||||||||||| |||||||| ||| |||| |
|
|
| T |
22729506 |
aatgataagttttagtgacaaccgcaatcgtaggcagaggtccttaatgtttttaaaatggtatctttagaattacctacgattttgtccatagccaaag |
22729407 |
T |
|
| Q |
229 |
gtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
|| ||||| ||| ||||| |||||||| |||||| |
|
|
| T |
22729406 |
gtggaaaatatgccgtgacagccatttgacaatga |
22729372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 28841371 - 28841288
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||| ||| ||||| |||||||| |||||| |
|
|
| T |
28841371 |
tttaaaatggtatctttagaattacctacgattttgtccgtaggtaaaggtgaaaaatatgccgtgacagccatttgacaatga |
28841288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 8882563 - 8882636
Alignment:
| Q |
195 |
ttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||| || |||||| | |||||| |||||| |||| |
|
|
| T |
8882563 |
ttagaattacctacggttttttccgtaggtaaaggtggaaaacttgcagtgacagtcatttgtcaatgatagac |
8882636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 14446320 - 14446207
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatg--tttaaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||| ||| |||| || | | ||||||||| |||||||||||||||| | ||||||||| |||||| |
|
|
| T |
14446320 |
aaacaatgataaattttagtgacagcggcaaccgtaggta--ggtctttaacgactttaaaatggtatccttagaattaccaatggttttgtctgtaggt |
14446223 |
T |
|
| Q |
225 |
aaaggtagaaaacatg |
240 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
14446222 |
aaaggtggaaaacatg |
14446207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 27190206 - 27190103
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||| || ||| | |||||| || ||| ||||| ||| |||||||||| | |||||||||||||||||| |
|
|
| T |
27190206 |
aaacaatgataagttttattgacaaccacaaccataggtagaagtccttaatatttttaaaattgtatacttagaattatccacggttttgtccgtaggt |
27190107 |
T |
|
| Q |
225 |
aaag |
228 |
Q |
| |
|
|||| |
|
|
| T |
27190106 |
aaag |
27190103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 9255798 - 9255724
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttg |
256 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||| | ||| |||||| || ||||||||||||||| |||||||| |
|
|
| T |
9255798 |
tttaaaatggtctccttagaattacctacg--tttattcgttggtaaatgtgtaaaacatgtagtgacagccatttg |
9255724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 6623694 - 6623642
Alignment:
| Q |
217 |
ccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagacg |
269 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |||||||| || ||| ||||| |
|
|
| T |
6623694 |
ccgtaggtaaaggtggaaaacatgtcgtgacagccatttggcactgacagacg |
6623642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 31410400 - 31410523
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacgg-ttttgtccgtagg |
223 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| ||| || ||| | |||||| |||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
31410400 |
aaacaatgataagttttagtgacagccgcaaccgtaggtagagatccataatgttttaaaaatgatctccttagaattacctacggtttttttccgtagg |
31410499 |
T |
|
| Q |
224 |
taaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
||||||| ||||||| | |||||| |
|
|
| T |
31410500 |
taaaggtggaaaacaagcagtgac |
31410523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 27925706 - 27925850
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgtt--taaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||||||||| |||||| | || ||| || ||| | ||||| ||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
27925706 |
aaacaatgataagttttagtgacagccgcaatcataggtagagatccataatgttcataaaatggtctccttagaattacctacg-ttttgtccgtaggt |
27925804 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatgagagacgg |
270 |
Q |
| |
|
||| || ||||||||| ||||| ||||||| |||||| |||||| |
|
|
| T |
27925805 |
aaatgtggaaaacatgccgtgacaaccatttgacaatgacagacgg |
27925850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 28840560 - 28840445
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgtt--taaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||||||||| | ||| |||| || || ||||| ||||| |||||| |||| ||| | |||||||||||||||||||||||| |
|
|
| T |
28840560 |
aaacaatgataagttttagtgacagtcacaatcgtagatagagatccttaatgttcttaaaatagtatctttaaatttacctacggttttgtccgtaggt |
28840461 |
T |
|
| Q |
225 |
aaaggtagaaaacatg |
240 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
28840460 |
aaaggtggaaaacatg |
28840445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 31708828 - 31708948
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||| ||||| || |||||||| ||| || ||| | |||||| |||||| | ||||||||||||||||| |||||||| ||||| |
|
|
| T |
31708828 |
aaacaatgataag-tttattgacagccacaaccgtaggtagagatccataatgtttttaaaatggtctccttagaattacctac-gttttgtctctaggt |
31708925 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
|||||| |||||| || |||||| |
|
|
| T |
31708926 |
aaaggtggaaaacttgcagtgac |
31708948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 45586480 - 45586602
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||||||| |||||| | |||||| |||||| | |||||| || ||||||||||||| ||||||||| |
|
|
| T |
45586480 |
aaacaacgataagttttagtgacagtcgcaaccgtatgtagaggtccataatgtttttaaaatggtctccttataagtacctacggttttttccgtaggt |
45586579 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
45586580 |
aaaggtggaaaacatgcagtgac |
45586602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 29528617 - 29528719
Alignment:
| Q |
130 |
caatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggtaaa |
227 |
Q |
| |
|
|||||||||| |||||| ||| |||||||| || ||| |||| |||||||||| ||||||| |||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
29528617 |
caatgataagttttagtaacagccgcaaccataggtagaggttcttgatgttttaaaaatgacatccttagaaatacctacggttttgttcgtaagtaaa |
29528716 |
T |
|
| Q |
228 |
ggt |
230 |
Q |
| |
|
||| |
|
|
| T |
29528717 |
ggt |
29528719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 24105147 - 24105288
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgtttaaaatgatatccttagaattacctacggttttgtccgtaggtaa |
226 |
Q |
| |
|
||||||||||||| |||||||||| | ||||| || ||| ||||| | ||||| |||||| | ||||||||||||| || | ||| |||||||||||| |
|
|
| T |
24105147 |
aaacaatgataagttttagtgacagcaacaaccataggtagcggtccataatgtt-aaaatggtctccttagaattacatatg-tttcgtccgtaggtaa |
24105244 |
T |
|
| Q |
227 |
aggtagaaaacatgtagtgaccgccatttgccaatgagagacgg |
270 |
Q |
| |
|
| || |||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
24105245 |
aagtggaaaacatgtagtgacaacaatttggcaatgagagacgg |
24105288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 261
Target Start/End: Complemental strand, 47300056 - 47299921
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
|||||| |||||| |||||||||| || ||||||| ||| ||||| | ||||||| |||||| | || ||||||||||||| | |||| ||||||||| |
|
|
| T |
47300056 |
aaacaacgataagttttagtgacagccacaaccgttggtagaggtcat-gatgtttttaaaatggtctctttagaattacctaggattttttccgtaggt |
47299958 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaat |
261 |
Q |
| |
|
|||||| ||||| |||||||||| | |||||| |||| |
|
|
| T |
47299957 |
aaaggtggaaaatatgtagtgacagtcatttggcaat |
47299921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 56039715 - 56039818
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtcctt--gatgtttaaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||| ||||| | ||||||||| ||| |||| || || |||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
56039715 |
aaacaatgataagttttactgacagctgcaaccgtaggtagcggtctttaatatttttaaaattgtatccttagaattacctacggttttgtccataggt |
56039814 |
T |
|
| Q |
225 |
aaag |
228 |
Q |
| |
|
|||| |
|
|
| T |
56039815 |
aaag |
56039818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 6899417 - 6899340
Alignment:
| Q |
157 |
accgtatgtataggtccttgatgtttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaa |
235 |
Q |
| |
|
|||||| ||| |||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6899417 |
accgtaagtagaggtcctttatgtttaaatcg-tatccttagaattacctacatttttgtccgtaggtaaaggtcgaaa |
6899340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 4325036 - 4324927
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatg-tttaaaatgatatccttagaattacctacggttttgtccgtaggta |
225 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| ||| ||| |||| | | ||| ||||||||| | | ||||||||||| ||| |||||| ||||||||| |
|
|
| T |
4325036 |
aaacaatgataagttttagtgacaaccacaactgtaggtaaaggttcataatgttttaaaatggtcttcttagaattacatac-gttttgcccgtaggta |
4324938 |
T |
|
| Q |
226 |
aaggtagaaaa |
236 |
Q |
| |
|
|| || ||||| |
|
|
| T |
4324937 |
aaagtggaaaa |
4324927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 54085679 - 54085626
Alignment:
| Q |
217 |
ccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagacgg |
270 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |||||||| |||||| |||||| |
|
|
| T |
54085679 |
ccgtaggtaaaggtggaaaacatgttgtgacagccatttgacaatgacagacgg |
54085626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 25106689 - 25106600
Alignment:
| Q |
142 |
ttagtgacaaccgcaaccgtatgtataggtccttgatg--tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggt |
230 |
Q |
| |
|
||||||||| |||||| ||| ||| |||||||||||| |||||||| ||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
25106689 |
ttagtgacagccgcaattgtaggtagaggtccttgatgtttttaaaatagtatccttagaattgtctacggtttt-tccgtagataaaggt |
25106600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 53693517 - 53693632
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgt---ttaaaatgatatccttagaattacctacggttttgtccgtagg |
223 |
Q |
| |
|
||||||||||||| |||||||||| || ||||||| ||| |||||| | |||| |||||||| | ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
53693517 |
aaacaatgataagttttagtgacagcca-aaccgtaggtagaggtccgtaatgtattttaaaatggtctccttagaattacctac-gttttttccatagg |
53693614 |
T |
|
| Q |
224 |
taaaggtagaaaacatgt |
241 |
Q |
| |
|
|||| || | |||||||| |
|
|
| T |
53693615 |
taaatgtggtaaacatgt |
53693632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 307
Target Start/End: Original strand, 23804825 - 23805009
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt-aaaatgatatccttagaattac---ctacggttttgtccgtag |
222 |
Q |
| |
|
||||||||||||| |||||||| | ||||| ||||| ||| | ||||| |||||| |||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
23804825 |
aaacaatgataagttttagtgatagccgcagccgtaggtagatatccttaatgttttaaaatggtaaccttagaattatactctacggttttgtccgtag |
23804924 |
T |
|
| Q |
223 |
gtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagacgggcacatttctgtttcaagtcgttgagaataatacaca |
307 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||| |||||| | || ||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
23804925 |
gtaaaggtggaaaacatgcggtgacagccatttgacaatgacaaacaggcacattttcgttgttagttgttgagaataatgcaca |
23805009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 31035910 - 31036054
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacgg--ttttgtccgtag |
222 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| ||| ||||| | ||||||| |||||| | ||||||||||||||||||| |||| || |||| |
|
|
| T |
31035910 |
aaacaatgataaattttagtgacagccgcaaccgtcggtagaggtcat-gatgtttttaaaatggtctccttagaattacctacggttttttttcggtag |
31036008 |
T |
|
| Q |
223 |
gtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagac |
268 |
Q |
| |
|
|||||||| |||||| ||||||||| | |||||| |||||| |||| |
|
|
| T |
31036009 |
gtaaaggtggaaaacttgtagtgacagtcatttgacaatgacagac |
31036054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 28041884 - 28041997
Alignment:
| Q |
151 |
accgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgacc |
248 |
Q |
| |
|
|||||||||||| ||| | |||| |||||||| ||| || |||||||||||||||||||||||||||| || ||||||||| |||||||| | |||| |
|
|
| T |
28041884 |
accgcaaccgtaggtagatgtccgtgatgtttttaaagtggtatccttagaattacctacggttttgtctgt-ggtaaaggtgaaaaacatgcattgaca |
28041982 |
T |
|
| Q |
249 |
gccatttgccaatga |
263 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
28041983 |
gccatttgacaatga |
28041997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 306
Target Start/End: Complemental strand, 5287022 - 5286851
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgtttaaaatgatatccttagaattacctacggttttgtccgtaggtaa |
226 |
Q |
| |
|
||||||| ||||| |||||||||| |||||| ||| |||||||||||| | ||| | |||| |||| ||||||||||||||| ||| ||||||| |
|
|
| T |
5287022 |
aaacaataataagttttagtgacagccgcaaatgtaagtataggtccttaa-----aaacgggtatctttagtattacctacggtttt-tccataggtaa |
5286929 |
T |
|
| Q |
227 |
aggtagaaaacatgtagtgaccgccatttgccaatgagagacgggcacatttctgtttcaagtcgttgagaataatacac |
306 |
Q |
| |
|
|||| | |||||| ||||||| | |||||| |||||| ||||||| |||||| ||| | ||||||||| |||||||||| |
|
|
| T |
5286928 |
aggt-ggaaacatatagtgacagtcatttgacaatgatagacggg-acattttcgttgccagtcgttgaaaataatacac |
5286851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 24276725 - 24276863
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgttt--aaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||||| | | | || | | |||||| |||||| | |||||||| ||||||||||||||||| ||| || |
|
|
| T |
24276725 |
aaacaatgataagttttactgacagccgcaaccgtaggaagatgttcataatgtttttaaaatggtctccttagagttacctacggttttgtctgtaagt |
24276824 |
T |
|
| Q |
225 |
aaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
|||| | ||||||| |||||| |||||||| |||||| |
|
|
| T |
24276825 |
aaagatgaaaaacatttagtgatagccatttgacaatga |
24276863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 25253106 - 25253052
Alignment:
| Q |
192 |
tccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
25253106 |
tccttagaattacctacg-ttttgtccgtaggtaaaggtggaaaacatgcagtgac |
25253052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 29953011 - 29953066
Alignment:
| Q |
192 |
tccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
29953011 |
tccttagaattacctacgattttttccgtaggtaaaggtggaaaacatgtcgtgac |
29953066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 38762229 - 38762172
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaac |
237 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
38762229 |
tttaaaatgatctctttagaattacctacagttttttccgtaggtaaaggtggaaaac |
38762172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 6113368 - 6113314
Alignment:
| Q |
192 |
tccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
6113368 |
tccttagaattacctacg-ttttgtctgtaggtaaaggtggaaaacatgcagtgac |
6113314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 9225919 - 9225837
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
||||||||| | |||||| |||||||||| |||| ||| |||||||| || |||||||||||||||| |||||||| |||||| |
|
|
| T |
9225919 |
tttaaaatggtctccttaaaattacctacattttt-tccataggtaaatgtggaaaacatgtagtgacagccatttggcaatga |
9225837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 43727412 - 43727329
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatga |
263 |
Q |
| |
|
||||||||| | ||||||||| |||||| |||| |||||||||||| || | |||||||||||||| |||||||| |||||| |
|
|
| T |
43727412 |
tttaaaatggtcaccttagaatcacctacatttttttccgtaggtaaatgtgggaaacatgtagtgacagccatttgacaatga |
43727329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 38761763 - 38761696
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacggttttgtccgtaggtaaaggtagaaaacatgtagtgac |
247 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| |||||||||||| || |||||| || |||||| |
|
|
| T |
38761763 |
tttaaaatgatctacttagaattacctatagttttttccgtaggtaaaagtggaaaacttgcagtgac |
38761696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 25023781 - 25023752
Alignment:
| Q |
180 |
tttaaaatgatatccttagaattacctacg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25023781 |
tttaaaatgatatccttagaattacctacg |
25023752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 43216948 - 43217000
Alignment:
| Q |
218 |
cgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagacgg |
270 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||||| || ||| |||||| |
|
|
| T |
43216948 |
cgtaggtaaaggtggaaaacatgtcgtgacagccatttggcactgacagacgg |
43217000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 17184 - 17070
Alignment:
| Q |
127 |
aaacaatgataaggtttagtgacaaccgcaaccgtatgtataggtccttgatgt--ttaaaatgatatccttagaattacctacggttttgtccgtaggt |
224 |
Q |
| |
|
||||||||||||| |||||||| | | ||||||||| ||| | |||| | |||| |||||||| |||||||| |||||| |||| |||||||||||| | |
|
|
| T |
17184 |
aaacaatgataagttttagtgatagcggcaaccgtaggtagaagtccataatgtatttaaaatggtatccttaaaattacatacg-ttttgtccgtagat |
17086 |
T |
|
| Q |
225 |
aaaggtagaaaacatg |
240 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17085 |
aaaggtagaaaacatg |
17070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 13118 - 13066
Alignment:
| Q |
217 |
ccgtaggtaaaggtagaaaacatgtagtgaccgccatttgccaatgagagacg |
269 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |||||||| || ||| ||||| |
|
|
| T |
13118 |
ccgtaggtaaaggtggaaaacatgtcgtgacagccatttgtcactgacagacg |
13066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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