View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_39 (Length: 332)
Name: NF7017_low_39
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 188 - 321
Target Start/End: Original strand, 9027949 - 9028082
Alignment:
| Q |
188 |
ctagcctcatcacaactcgcttcacgcactaaggagctgcctgtcgtgaaagtcagttaaggaagtggtggaatacaaatagaaattatttcactttggc |
287 |
Q |
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| T |
9027949 |
ctagcctcgtaacaactcgcgtcacgcactaaggagctgcctgtcgtgaaagtcagttacggaagtggtggagtacaaatagaagttatttccctttggc |
9028048 |
T |
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| Q |
288 |
ttattgggttatcgtccaacctcgtcacaggttc |
321 |
Q |
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| T |
9028049 |
ttattaggttatcgtccaacctcgtcacaagttc |
9028082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 188 - 321
Target Start/End: Original strand, 9018547 - 9018680
Alignment:
| Q |
188 |
ctagcctcatcacaactcgcttcacgcactaaggagctgcctgtcgtgaaagtcagttaaggaagtggtggaatacaaatagaaattatttcactttggc |
287 |
Q |
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| T |
9018547 |
ctagccttgtcacaactcgcatcgcgcactaaggagctgcctgtcgtgaaagtcaactacggaagtggtggagtacaaatagaaattatttccctttggc |
9018646 |
T |
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| Q |
288 |
ttattgggttatcgtccaacctcgtcacaggttc |
321 |
Q |
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| T |
9018647 |
ttattgggtcatcgtccaacctcgtcacaagttc |
9018680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 188 - 321
Target Start/End: Original strand, 8993267 - 8993401
Alignment:
| Q |
188 |
ctagcctcatcacaactcgc-ttcacgcactaaggagctgcctgtcgtgaaagtcagttaaggaagtggtggaatacaaatagaaattatttcactttgg |
286 |
Q |
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| T |
8993267 |
ctagccttgtcacaactcacgttcccgcactaaggagctgcctgtcgtgaaagtcagatacggaagtggtggagtacaaatagaaattatttccctctgg |
8993366 |
T |
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| Q |
287 |
cttattgggttatcgtccaacctcgtcacaggttc |
321 |
Q |
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| T |
8993367 |
cttattgggttatcgtccaacctcgtcacaagttc |
8993401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 8993147 - 8993205
Alignment:
| Q |
104 |
ccattgaaagaatttcaaaatgtctagccttctcacaacttgcaagtgcactaaggagc |
162 |
Q |
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| T |
8993147 |
ccattgaaagaattttataatgtctagccttgtcacaacttgcgcgcgcactaaggagc |
8993205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 9018418 - 9018479
Alignment:
| Q |
106 |
attgaaagaatttcaaaatgtctagccttctcacaacttgcaagtgcactaaggagctgcgt |
167 |
Q |
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| T |
9018418 |
attgaaagaatttcataatgtctagccttgtcacaacttgcgctcgcactaaggagcggcgt |
9018479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 9027821 - 9027861
Alignment:
| Q |
104 |
ccattgaaagaatttcaaaatgtctagccttctcacaactt |
144 |
Q |
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| T |
9027821 |
ccattgaaagaatttcacaatgtctagccttgtcacaactt |
9027861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 8987384 - 8987426
Alignment:
| Q |
104 |
ccattgaaagaatttcaaaatgtctagccttctcacaacttgc |
146 |
Q |
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| T |
8987384 |
ccattgaaagaatttcataatgtccagccttatcacaacttgc |
8987426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 9018524 - 9018586
Alignment:
| Q |
104 |
ccattgaaagaatttcaaaatgtctagccttctcacaacttgca-agtgcactaaggagctgc |
165 |
Q |
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| T |
9018524 |
ccattgaaggaatttcagaatgtctagccttgtcacaactcgcatcgcgcactaaggagctgc |
9018586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 9016956 - 9017000
Alignment:
| Q |
212 |
cgcactaaggagctgcctgtcgtgaaagtcagttaaggaagtggt |
256 |
Q |
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| T |
9016956 |
cgcactaaggagctgtgtgtcgcgaaagtcagttacggaagtggt |
9017000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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