View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_42 (Length: 322)
Name: NF7017_low_42
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 31837419 - 31837132
Alignment:
| Q |
19 |
tactattaaaactttgtttgagcgaaaatactattaaaacttaacaagtacaagaagtggaagaa---tttacaacaatgtaaacatgagctacaaccaa |
115 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
31837419 |
tactattacaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacatgagctacaaccaa |
31837320 |
T |
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| Q |
116 |
atgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtatatcaggttcaagaatcgggtgttgattttgat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31837319 |
atgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtataccaggttcaagaatcgggtgttgattttgat |
31837220 |
T |
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| Q |
216 |
gaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattgccaacacaagact |
303 |
Q |
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| T |
31837219 |
gaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattgccaacacaagact |
31837132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 290
Target Start/End: Complemental strand, 31841449 - 31841182
Alignment:
| Q |
22 |
tattaaaactttgtttgagcgaaaatactattaaaacttaacaagtacaagaagtggaagaa---tttacaacaatgtaaacatgagctacaaccaaatg |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
31841449 |
tattaaaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacatgagctacaaccaaatg |
31841350 |
T |
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| Q |
119 |
ctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtatatcaggttcaagaatcgggtgttgattttgatgaa |
218 |
Q |
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| T |
31841349 |
ctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaat----accaggttcaagaatcgggtgttgattttgatgaa |
31841254 |
T |
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| Q |
219 |
ctccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
290 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31841253 |
ctccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
31841182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 38041034 - 38040895
Alignment:
| Q |
19 |
tactattaaaactttgtttgagcgaaaatactattaaaacttaacaagtacaagaagtggaagaatttacaacaatgtaaacatgagctacaaccaaatg |
118 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||||||||| |
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| T |
38041034 |
tactattaaaactttgtttgagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatg |
38040935 |
T |
|
| Q |
119 |
ctagcttaattaaaacacaaagcaacagagaaagtttatca |
159 |
Q |
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| T |
38040934 |
ctagc-taattaaaacacagaccaacagagaaagtttatca |
38040895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 38040897 - 38040787
Alignment:
| Q |
191 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
38040897 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgcaacgtaaagttcttccattg |
38040798 |
T |
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| Q |
291 |
ccaacacaaga |
301 |
Q |
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||| |||||| |
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| T |
38040797 |
acaagacaaga |
38040787 |
T |
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