View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_43 (Length: 317)
Name: NF7017_low_43
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 14916025 - 14915741
Alignment:
| Q |
20 |
catagtaaacttaatttcaagaataatctttacttcatcaaaagttcttaatgtataaaattccacaaacatatatatgannnnnnncacaacataaaac |
119 |
Q |
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| T |
14916025 |
catagtaaacttaatttcaagaataatctttacttcatcaaaagttcttaatgtataaaattccacaaacatatatatgatttttttcacaacataaaac |
14915926 |
T |
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| Q |
120 |
ttataactaatgataatcaagttattcacatataaaaccgtaataatagtgctacataaatatatgtacatatcagcttcaatgatttcaaaatcatgtg |
219 |
Q |
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| T |
14915925 |
ttataactaatgataatcaagttattcacatataaaaccgtaataatagtgctacataaatatatgtacatatcatcttcaatgatttcaaaatcatgtg |
14915826 |
T |
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| Q |
220 |
agatactagatatcc-aaatttttataagggcttcatnnnnnnnnnnnnnnntattctcatcaaactaatccaaataaaattgttcttct |
308 |
Q |
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| T |
14915825 |
agatactagatatccaaaaaatttataagggcttcat-----aaaaaaaaaatattctcatcaaactaatccaaataaaattgttcttct |
14915741 |
T |
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