View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7017_low_5 (Length: 583)

Name: NF7017_low_5
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7017_low_5
NF7017_low_5
[»] chr2 (9 HSPs)
chr2 (1-567)||(11834763-11835329)
chr2 (23-567)||(11821035-11821579)
chr2 (227-492)||(11933638-11933903)
chr2 (227-492)||(11946859-11947124)
chr2 (227-305)||(11917654-11917732)
chr2 (233-305)||(8338659-8338731)
chr2 (257-462)||(11803587-11803792)
chr2 (396-505)||(11917454-11917563)
chr2 (242-327)||(35538944-35539029)
[»] chr4 (10 HSPs)
chr4 (242-506)||(38125411-38125675)
chr4 (238-504)||(38090579-38090845)
chr4 (233-377)||(36107962-36108106)
chr4 (242-462)||(38129408-38129628)
chr4 (228-305)||(21482766-21482843)
chr4 (239-377)||(36080098-36080236)
chr4 (233-297)||(34971539-34971603)
chr4 (233-297)||(36100783-36100847)
chr4 (233-287)||(36090229-36090283)
chr4 (386-506)||(38072671-38072791)
[»] chr6 (1 HSPs)
chr6 (233-377)||(6838723-6838867)


Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 11834763 - 11835329
Alignment:
Q  1 gtcagcgcggcctagaaaaaatgcaacaacagaagctctaatagtttttgttcctttgactaccgtagaagatttaggttgcaaaagaagcctcatgaaa 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11834763 gtcagcgcggcctagaaacaatgcaacaacagaagctctaatagtttttgttcctttgacaaccgtagaagatttaggttgcaaaagaagcctcatgaaa 11834862  T
Q  101 atcctattatcagttgttggagcaacttgttgccattgaacaacaagatcagttgcattctgttccaatgttttctcaattcggaaaacagtaacggttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11834863 atcctattatcagttgttggagcaacttgttgccattgaacaacaagatcagttgcattctgttccaatgttttctcaattcggaaaacagtaacggttt 11834962  T
Q  201 taggaaccgctactaatttaatggtataagacagaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11834963 taggaaccgctactaatttaatggtataagacagaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgattt 11835062  T
Q  301 cctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatattttctcaacattgcaccataccctccacca 400  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11835063 cctattcaaaagccttcccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttctcaacattgcaccataccctccacca 11835162  T
Q  401 ctgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11835163 ctgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtag 11835262  T
Q  501 caccagcttggatataagcaacttcattttttatatcaacattgattgttcttagattaaacatatc 567  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11835263 caccagcttgaatataagcaacttcattttttatatcaacattgattgttcttagattaaacatatc 11835329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 23 - 567
Target Start/End: Complemental strand, 11821579 - 11821035
Alignment:
Q  23 gcaacaacagaagctctaatagtttttgttcctttgactaccgtagaagatttaggttgcaaaagaagcctcatgaaaatcctattatcagttgttggag 122  Q
    ||||||||||||||||||||||||||||||||||| || ||| |||||| | |||||||||||||||||||||| |||| ||||||||| ||||| || |    
T  11821579 gcaacaacagaagctctaatagtttttgttcctttaacaaccttagaagttataggttgcaaaagaagcctcataaaaagcctattatccgttgtcggcg 11821480  T
Q  123 caacttgttgccattgaacaacaagatcagttgcattctgttccaatgttttctcaattcggaaaacagtaacggttttaggaaccgctactaatttaat 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||     
T  11821479 caacttgttgccattgaacaacaagatcagtagcattctgttccaaagttttctcaatacgaaaaacagtaacggtttcaggaaccgctactaatttaac 11821380  T
Q  223 ggtataagacagaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttccctta 322  Q
     |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11821379 agtataagacagaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctaccctta 11821280  T
Q  323 acatcaaaaatttcagcatcaataatattatcaacggataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccga 422  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||  ||||||||||||||||    
T  11821279 acatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccga 11821180  T
Q  423 cagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccagcttggatataagcaac 522  Q
    ||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||| || |||||||||||||||||||||||| |||| |  ||||||||    
T  11821179 cagttggacacacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccaccttgaacgtaagcaac 11821080  T
Q  523 ttcattttttatatcaacattgattgttcttagattaaacatatc 567  Q
    ||| || ||||||||||||||||||||||| ||||||||||||||    
T  11821079 ttcgttctttatatcaacattgattgttctaagattaaacatatc 11821035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 227 - 492
Target Start/End: Complemental strand, 11933903 - 11933638
Alignment:
Q  227 taagacagaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacat 326  Q
    ||||| |||||||||||||| ||||| |||||||| |||   |||||||||||||||||||| ||||||||||| ||||  |  |  || || |||||||    
T  11933903 taagaaagaacaacaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacat 11933804  T
Q  327 caaaaatttcagcatcaataatattatcaacggataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagt 426  Q
    | |  ||||  ||||| |||||||||||||| || | |||||||||||||| |||   |||||| || |||||||| |  || || |||||||| || ||    
T  11933803 cgattatttgtgcatcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggt 11933704  T
Q  427 tggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcacc 492  Q
     ||||| || || || ||||| |||||||||||||| ||||||  |||||| ||||||| ||||||    
T  11933703 aggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc 11933638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 227 - 492
Target Start/End: Complemental strand, 11947124 - 11946859
Alignment:
Q  227 taagacagaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacat 326  Q
    ||||| |||||||||||||| ||||| |||||||| |||   |||||||||||||||||||| ||||||||||| ||||  |  |  || || |||||||    
T  11947124 taagaaagaacaacaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacat 11947025  T
Q  327 caaaaatttcagcatcaataatattatcaacggataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagt 426  Q
    | |  ||||  ||||| |||||||||||||| || | |||||||||||||| |||   |||||| || |||||||| |  || || |||||||| || ||    
T  11947024 cgattatttgtgcatcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggt 11946925  T
Q  427 tggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcacc 492  Q
     ||||| || || || ||||| |||||||||||||| ||||||  |||||| ||||||| ||||||    
T  11946924 aggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc 11946859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 11917732 - 11917654
Alignment:
Q  227 taagacagaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctat 305  Q
    ||||| ||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||| ||||||||||| ||||    
T  11917732 taagaaagaacaacaccaaagttagctccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctat 11917654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 8338731 - 8338659
Alignment:
Q  233 agaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctat 305  Q
    |||| |||||||||||||||||||||||| || |  ||||||||||| |||||||| ||||||||||| ||||    
T  8338731 agaataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttctcccattgattttctat 8338659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 462
Target Start/End: Original strand, 11803587 - 11803792
Alignment:
Q  257 ccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaa 356  Q
    ||||| |||| |||||||||||| ||||| ||||||||  |||| ||||| |  | | |||| |||||||| |  |||| ||||||||| | |||||||     
T  11803587 ccacctcctcttatagcccaaaatagatcctcacccatcaattttctatttaggatctttccattaacatctaccatttgagcatcaattacattatcag 11803686  T
Q  357 cggataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaac 456  Q
    | |  | |||||||||||| || | || |||| | || || ||||||| |||||| || ||||| ||||| |||||   |||||| ||||||||||||||    
T  11803687 ctgcaagaccatattttctaaataatgtaccaaatccacctccactgaagtgacctcctacaccaacagtaggacaactaccagctggaaatccatgaac 11803786  T
Q  457 tttact 462  Q
     |||||    
T  11803787 gttact 11803792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 505
Target Start/End: Complemental strand, 11917563 - 11917454
Alignment:
Q  396 caccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaag 495  Q
    ||||||| || || || |||||||| ||||| ||||| || || || | |||  |||||  |||||| || |||| |||||| |||||||||||||||||    
T  11917563 caccactaacatgtcctccaacaccaacagtcggacaaacgccggccgcaaaagcatgagttttacttttctcagcaattctatagtaaacttcaccaag 11917464  T
Q  496 tgtagcacca 505  Q
    ||| ||||||    
T  11917463 tgttgcacca 11917454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 35539029 - 35538944
Alignment:
Q  242 ccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatc 327  Q
    |||||| ||||| ||| ||| |||| ||| |||||||||| |||||| ||||||||||| ||||| | || |||||| || |||||    
T  35539029 ccaaaagtagcagcactacctcctcttatggcccaaaaaatatcttctcccattgattttctattgagaatccttccatttacatc 35538944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 242 - 506
Target Start/End: Complemental strand, 38125675 - 38125411
Alignment:
Q  242 ccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcat 341  Q
    |||||||| || || ||||| ||||  |||||||||||||| ||||||||||||||||||||||  | || ||| || |||||||||| |||||||||||    
T  38125675 ccaaaacttgctcctccacctcctctaatagcccaaaaaagttcttcacccattgatttcctatcaagaatcctaccattaacatcaacaatttcagcat 38125576  T
Q  342 caataatattatcaacggataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagc 441  Q
    ||| || ||||||||  || || ||| ||||||||| |||   |||||||||||||||||| | ||||||||||||||| |||||   ||| || |||||    
T  38125575 caacaacattatcaatagacaacccaaattttctcatcatgttaccataccctccaccactcaagtgaccaccaacaccaacagtaatacaaaccccagc 38125476  T
Q  442 aggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccag 506  Q
    |||||| ||||||||||||||||| ||  | || || || ||||| ||||||||| |||||||||    
T  38125475 aggaaagccatgaactttactcttctcccatatcctataataaacctcaccaagtatagcaccag 38125411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 238 - 504
Target Start/End: Complemental strand, 38090845 - 38090579
Alignment:
Q  238 aacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttca 337  Q
    ||||||||||||||| |||||||| ||||  ||||||||||||| |||||| |||||||||| |||||  |  |  ||||| | |||||||| ||| | |    
T  38090845 aacaccaaaactagctccaccaccacctctaatagcccaaaaaacatcttcccccattgattccctatcaagcactcttccatcaacatcaacaatctta 38090746  T
Q  338 gcatcaataatattatcaacggataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacac 437  Q
    ||||| | |||||||||||| ||||| ||| ||||||||| |||   ||||||||| |||||||| |  || ||||||||||| ||||| ||||| || |    
T  38090745 gcatccaaaatattatcaacagataacccaaattttctcatcatgttaccataccccccaccactaaaatgtccaccaacaccaacagtaggacaaaccc 38090646  T
Q  438 cagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcacc 504  Q
    |||| ||||| ||||||||  ||||  | |||||||| || || ||||||||||||| |||||||||    
T  38090645 cagctggaaaaccatgaacactactaatctcagaaatcctataataaacttcaccaattgtagcacc 38090579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 36108106 - 36107962
Alignment:
Q  233 agaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaa 332  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||  | ||   | |||||||||||||  |    
T  36108106 agaataacaccaaaactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaacca 36108007  T
Q  333 tttcagcatcaataatattatcaacggataaaccatattttctca 377  Q
    |||  |||||||||||||||||||| || | |||| |||||||||    
T  36108006 tttttgcatcaataatattatcaacagaaagaccaaattttctca 36107962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 242 - 462
Target Start/End: Complemental strand, 38129628 - 38129408
Alignment:
Q  242 ccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcat 341  Q
    |||||||| || || ||||| ||||  |||||||||||||||||||| ||||| | |||| | |  | ||  || || || ||||||| ||||| |||||    
T  38129628 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcat 38129529  T
Q  342 caataatattatcaacggataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagc 441  Q
    ||| |||||||||||  ||||| ||  ||||||||| |||   |||||||||||| ||||| |  || ||||||||||| ||||||||||| || || ||    
T  38129528 caacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggccaccaacaccaacagttggacaaacgccggc 38129429  T
Q  442 aggaaatccatgaactttact 462  Q
    |||||| ||||||||||||||    
T  38129428 aggaaagccatgaactttact 38129408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 21482843 - 21482766
Alignment:
Q  228 aagacagaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctat 305  Q
    |||||| || ||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||    
T  21482843 aagacaaaataacaccataactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctat 21482766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 377
Target Start/End: Complemental strand, 36080236 - 36080098
Alignment:
Q  239 acaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcag 338  Q
    ||||||||||| ||||||||||| || | |||||||||||| | |||||| ||||||||||| ||||  | ||  || || |||||||||| |||||  |    
T  36080236 acaccaaaacttgcaccaccaccaccccttatagcccaaaataaatcttctcccattgattttctatcaagaatactaccattaacatcaacaatttttg 36080137  T
Q  339 catcaataatattatcaacggataaaccatattttctca 377  Q
    | ||||| ||||||||||| |||| |||| |||||||||    
T  36080136 cgtcaattatattatcaacagatagaccaaattttctca 36080098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 34971539 - 34971603
Alignment:
Q  233 agaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattga 297  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||| |||||||| ||||||||    
T  34971539 agaataacaccaaaactagcaccaccaccacctctgatagcccaaaagagatcttctcccattga 34971603  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 36100847 - 36100783
Alignment:
Q  233 agaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattga 297  Q
    |||| |||||||||||||||||||||||| || | |||||||||||| |||||||| ||||||||    
T  36100847 agaataacaccaaaactagcaccaccaccaccccttatagcccaaaatagatcttctcccattga 36100783  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 36090229 - 36090283
Alignment:
Q  233 agaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatctt 287  Q
    |||| ||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  36090229 agaataacaccaaaactagccccaccaccacctcttatagcccaaaaaagatctt 36090283  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 506
Target Start/End: Complemental strand, 38072791 - 38072671
Alignment:
Q  386 ccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaa 485  Q
    ||||| || |||||||||| ||| ||||||||||| ||||| ||||| |||||  |||| || ||| ||  ||| || ||||  | |||| |||||||||    
T  38072791 ccatagccaccaccactgaagtgtccaccaacacctacagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaa 38072692  T
Q  486 cttcaccaagtgtagcaccag 506  Q
     ||||||||| || |||||||    
T  38072691 gttcaccaagggttgcaccag 38072671  T

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Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 6838867 - 6838723
Alignment:
Q  233 agaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaa 332  Q
    |||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||| ||||  | ||   | ||||||||||||| ||    
T  6838867 agaataacaccaaaactagcaccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaacaa 6838768  T
Q  333 tttcagcatcaataatattatcaacggataaaccatattttctca 377  Q
    |||  || ||||||||||||||||  || | |||| |||||||||    
T  6838767 tttttgcgtcaataatattatcaatagaaagaccaaattttctca 6838723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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