View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_50 (Length: 301)
Name: NF7017_low_50
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 43792243 - 43792521
Alignment:
| Q |
1 |
accacttgaatatgttggaaaaacacaacaaagggggatttgaattatgttaatcattttaaaatctcttcgcaaagacatgtgtttagttaaaccatag |
100 |
Q |
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| T |
43792243 |
accacttgaatatgttggaaaaacacgacaaaaggggatttgaattatgttaatcattttaaaatcttttcgcaaagacatgtgtttagttaaaccatag |
43792342 |
T |
|
| Q |
101 |
ttgttcttcaaattaattttaacaaacacgttagttctttgtcaaatcatttaactccatgtgcaatgcttagctaaaaaggtgaagttaaatcacaaag |
200 |
Q |
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| T |
43792343 |
tcgtttttcaaattaattttaacaaccacgttagttcttattcaaatcatttaactccatgtgcaatgcttagataaaaaggtgaagttaaatcacaaag |
43792442 |
T |
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| Q |
201 |
aagcactgcttagtaagtaagttaaagaataaaagagagtaagagaaatgagatgacacaatatgtttatactagttaatcat |
283 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43792443 |
aagcactgcttagtaagttttt----gaataaaagagagtaagagaaatgagatgacacaatatgtatatactagttaatcat |
43792521 |
T |
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