View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_52 (Length: 284)
Name: NF7017_low_52
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 20143054 - 20143318
Alignment:
| Q |
4 |
attgatggttgatgaattcaacgaccatcgatatgaaaaatcaaaatatgcaagagaatttaaaccgtctgatctcaatcaaacgaccatcgatatgatg |
103 |
Q |
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| T |
20143054 |
attgatggttgatgaattcaacgaccatcgatataaaaaatcaaaatatgcatgagaatttaaaccgtctgatctcaatcaaaagaccatcgatatgatg |
20143153 |
T |
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| Q |
104 |
acttcctggatgcatttagtcatcgactagaacggaacccgaatacaaaattcataagatgaagtaaagcatgcaatttaattaaaagcttgataattac |
203 |
Q |
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| T |
20143154 |
acttcctggatgcatttagtcatcgactagaacggaacccgaatacaaaattcataagatgaagtaaagcatgcaatttaattaaaagcttgataattac |
20143253 |
T |
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| Q |
204 |
caaaaaattctctccggatggcgcagtgaagaatactatccccattgcttcgaataagatcttta |
268 |
Q |
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| T |
20143254 |
caaaaaattctctctggatggtgcagtgaagaatactatccccattgtttcgaataagatcttta |
20143318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 23270142 - 23269868
Alignment:
| Q |
4 |
attgatggttgatgaattcaacgaccatcgatatgaaaaatcaaaatatgcaagagaatttaaaccgtctgatctcaatcaaacgaccatcgatatgatg |
103 |
Q |
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| T |
23270142 |
attgatggttgatgaattcaacgaccatggatatgaaaaatcaaaatatgcacgagaatttaaaccgtctgatctcaatcaaacgaccatcgatatgatg |
23270043 |
T |
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| Q |
104 |
acttcctggatgcatttagtcatcgactagaacggaacccgaata----caaaattcataagatgaagtaaagcatgcaatttaattaaaagcttgataa |
199 |
Q |
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| T |
23270042 |
acttcctgaatgcatttagtcatcgactagaacagaacccaaatatatacaaaattcataagatgaagtaaagcatgcaatttaattaaaagcttgataa |
23269943 |
T |
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| Q |
200 |
ttaccaaaaaattctctccggatggcgcagtgaagaatactatccccattgcttcgaataagatctttagtataa |
274 |
Q |
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| T |
23269942 |
ttaccaaaaaattctctccggatggcgcagtgaagaatactatccccattgcttcgaataagatctttagtataa |
23269868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 28982082 - 28982121
Alignment:
| Q |
229 |
gtgaagaatactatccccattgcttcgaataagatcttta |
268 |
Q |
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| T |
28982082 |
gtgaagaatactatcccaattgcttcgaataagatcttta |
28982121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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