View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_57 (Length: 267)
Name: NF7017_low_57
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 1104189 - 1103934
Alignment:
| Q |
1 |
agtaaacttcatttgtattgttcacaaagtttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccact |
100 |
Q |
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| T |
1104189 |
agtaaacttcatttgtattgttcacaaattttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccact |
1104090 |
T |
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| Q |
101 |
cctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaattt |
200 |
Q |
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| T |
1104089 |
cctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaattt |
1103990 |
T |
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| Q |
201 |
ttccaagaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
256 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103989 |
ttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
1103934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 66 - 256
Target Start/End: Complemental strand, 1047094 - 1046904
Alignment:
| Q |
66 |
gctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagccc |
165 |
Q |
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| T |
1047094 |
gctccactaaatccaactccattccaaggaccactcctatgaatttcaactgatcctcttttcaaaacaatttctggattactacgaaggacaatacccc |
1046995 |
T |
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| Q |
166 |
aagtaaaatctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
256 |
Q |
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| T |
1046994 |
aagttaaatctcccgaagatggatcgtcccaatttttccaagaagttaatggacgattaagaccaatttttaggtcccatccaagcttcat |
1046904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 63 - 256
Target Start/End: Complemental strand, 1071910 - 1071717
Alignment:
| Q |
63 |
ggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatag |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1071910 |
ggtgctccactaaatccaactccattccaaggaccactcctgtgaatttcaactgatccttttttcaatacaatttctggattactatgaaggacaatac |
1071811 |
T |
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| Q |
163 |
cccaagtaaaatctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
256 |
Q |
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| T |
1071810 |
cccatgttaaatctcccgatgatggatcgtcccaatttttccaagaagttaattgacgattaagaccggtttttaagtcccatccatgcttcat |
1071717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 63 - 256
Target Start/End: Complemental strand, 1087571 - 1087378
Alignment:
| Q |
63 |
ggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatag |
162 |
Q |
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|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
1087571 |
ggtgctccactaaatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactactaaggacaatac |
1087472 |
T |
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| Q |
163 |
cccaagtaaaatctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
256 |
Q |
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| T |
1087471 |
cccaagttaaatctcccgaagatggatcgtcccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
1087378 |
T |
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