View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_61 (Length: 253)
Name: NF7017_low_61
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 45334984 - 45334761
Alignment:
| Q |
17 |
aattattggttgtcacctatagtttttctgccattctcacagtttgagttttgaacttcgtgtactgcaggacccaaggaattcacttctctgttttaca |
116 |
Q |
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| T |
45334984 |
aattattggttgtcacctatagtttttctgccattctcacagtttgagttttgaacttcgtgtactgcaggacccaaggaattcacttctctgttttaca |
45334885 |
T |
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| Q |
117 |
gtcttcagagttggagggtaatttaactgctgtacaaaatcaaattctttcaaaattttgtttatgaaatacttagccaaacacacacttagactaattc |
216 |
Q |
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| T |
45334884 |
gtcttcagagttggagggtaatttaactgctgtacaaaatcaaattctttcaaaattttgtttatgaaatacttagccaaacacacacttagactaattc |
45334785 |
T |
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| Q |
217 |
ttctatccttatggaaccatgttc |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
45334784 |
ttctatccttatggaaccatgttc |
45334761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 20789720 - 20789663
Alignment:
| Q |
153 |
aaatcaaattctttcaaaattttgtttatgaaatacttagccaaacacacacttagac |
210 |
Q |
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| T |
20789720 |
aaatcatattctttcaaaattatgtttatgaaatacttagccaaacacacacttagac |
20789663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 20790070 - 20790011
Alignment:
| Q |
77 |
tgtactgcaggacccaaggaattcacttctctgttttacagtcttcagagttggagggta |
136 |
Q |
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| T |
20790070 |
tgtaatgcaggacccaaggaattcacttctctattttacagtcttcagagctggagggta |
20790011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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