View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7017_low_64 (Length: 250)

Name: NF7017_low_64
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7017_low_64
NF7017_low_64
[»] chr4 (5 HSPs)
chr4 (1-242)||(17769508-17769747)
chr4 (152-241)||(24929459-24929547)
chr4 (150-187)||(29601022-29601059)
chr4 (121-174)||(47118950-47119003)
chr4 (107-187)||(50742809-50742887)
[»] chr2 (4 HSPs)
chr2 (121-241)||(33256706-33256825)
chr2 (151-236)||(13736308-13736392)
chr2 (121-170)||(680539-680588)
chr2 (147-187)||(24141662-24141702)
[»] chr8 (5 HSPs)
chr8 (130-241)||(26716432-26716542)
chr8 (153-236)||(29973052-29973134)
chr8 (151-186)||(31862513-31862548)
chr8 (121-185)||(13459666-13459730)
chr8 (151-187)||(20672769-20672805)
[»] chr5 (3 HSPs)
chr5 (121-236)||(17258868-17258982)
chr5 (151-241)||(28586781-28586870)
chr5 (127-176)||(12467163-12467212)
[»] chr1 (6 HSPs)
chr1 (125-179)||(31517729-31517783)
chr1 (135-178)||(2462980-2463023)
chr1 (152-187)||(25479600-25479635)
chr1 (154-187)||(33975589-33975622)
chr1 (126-186)||(3223688-3223747)
chr1 (122-178)||(37593670-37593726)
[»] chr7 (5 HSPs)
chr7 (121-174)||(19719038-19719091)
chr7 (126-184)||(12234879-12234937)
chr7 (121-179)||(25670571-25670629)
chr7 (154-187)||(21453313-21453346)
chr7 (121-178)||(46104552-46104609)
[»] chr3 (2 HSPs)
chr3 (125-179)||(41633387-41633441)
chr3 (150-187)||(6483820-6483857)
[»] chr6 (2 HSPs)
chr6 (107-187)||(31686336-31686414)
chr6 (201-241)||(2027470-2027510)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 17769508 - 17769747
Alignment:
Q  1 tacttctaacttctaaatagacacatcaaataacatatagaccatgggcctatttagattagctcatttgagcttatatactcctatactagcattagca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  17769508 tacttctaacttctaaatagacacgtcaaataacatatagaccatgggcctatttagattaactcatttgagcttatatactattatactagcattagca 17769607  T
Q  101 cacacttttgagagaacttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaact 200  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  17769608 ca--cttttgagagaacttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctacgaaaact 17769705  T
Q  201 gcttataggttttgtgaaaatagtttgactttatttcatctc 242  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  17769706 gcttacaggttttatgaaaatagtttgactttatttcatctc 17769747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 24929547 - 24929459
Alignment:
Q  152 tgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttatttcatct 241  Q
    |||||||||||||| | |||||||||||||| | | || ||| |||||  ||||||| |||| |||||| |||| |||||||||| ||||    
T  24929547 tgttttcagcttatttccataagctctctagtaga-gtttatgaaaacaacttatagcttttatgaaaacagttagactttattttatct 24929459  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 29601022 - 29601059
Alignment:
Q  150 actgttttcagcttatcttcataagctctctaggatag 187  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  29601022 actgttttcagcttattttcataagttctctaggatag 29601059  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 47118950 - 47119003
Alignment:
Q  121 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataag 174  Q
    |||||||||||||||||||||  |||  |  |||||||||||||||||||||||    
T  47118950 tatgaaaacaactcatgacattgttattggttgttttcagcttatcttcataag 47119003  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 50742809 - 50742887
Alignment:
Q  107 tttgagagaacttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggatag 187  Q
    |||||||||||||||  |||||||  |||||||||||| | |  ||||||||| || || ||||||||||||| |||||||    
T  50742809 tttgagagaacttat--gaaaacagttcatgacatgttcataccctgttttcaactcattttcataagctctccaggatag 50742887  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 33256825 - 33256706
Alignment:
Q  121 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaa 220  Q
    |||||||||| || |||||||||| | | |||||| ||||||||| |||||| | |||  ||||| | | ||| |||||||||||||| || | ||||||    
T  33256825 tatgaaaacagcttatgacatgttcataaactgttctcagcttattttcatacggtcttcaggatggct-tatgaaaactgcttatagtttatatgaaaa 33256727  T
Q  221 tagtttgactttatttcatct 241  Q
     ||||||||||||||| ||||    
T  33256726 cagtttgactttattttatct 33256706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 13736308 - 13736392
Alignment:
Q  151 ctgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttattt 236  Q
    |||||||||  |||| |||||||||||||||| |||| | ||| ||||| |||||||| |  ||||||||||||||||||| ||||    
T  13736308 ctgttttcaagttattttcataagctctctagtatagct-tatgaaaacagcttatagctgatgtgaaaatagtttgacttcattt 13736392  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 680588 - 680539
Alignment:
Q  121 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttca 170  Q
    |||||||||| || |||||||||||| | |||||||||||||||| ||||    
T  680588 tatgaaaacagcttatgacatgtttataaactgttttcagcttattttca 680539  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 24141662 - 24141702
Alignment:
Q  147 gagactgttttcagcttatcttcataagctctctaggatag 187  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  24141662 gagactgttttcagcttgttttcataagctctataggatag 24141702  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 26716432 - 26716542
Alignment:
Q  130 aactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgac 229  Q
    ||||||| ||||||||  |  ||||||||||||||| | | ||| |||||||||||||||| || ||||   ||||||| |||||| |||||| ||||||    
T  26716432 aactcataacatgtttgtaagctgttttcagcttatttccgtaacctctctaggataggtc-attaaaaaatcttatagcttttgtaaaaataatttgac 26716530  T
Q  230 tttatttcatct 241  Q
    ||||||| ||||    
T  26716531 tttatttaatct 26716542  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 29973134 - 29973052
Alignment:
Q  153 gttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttattt 236  Q
    |||||||| |||| | ||||| ||||| ||||||| | ||| |||||  ||||||| || ||||||||||||||||||||||||    
T  29973134 gttttcagtttatttccataaactctcaaggatagct-tatgaaaacaacttatagcttatgtgaaaatagtttgactttattt 29973052  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 31862548 - 31862513
Alignment:
Q  151 ctgttttcagcttatcttcataagctctctaggata 186  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31862548 ctgttttcagcttattttcataagctctctaggata 31862513  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 13459730 - 13459666
Alignment:
Q  121 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggat 185  Q
    |||||||||| || ||||||| || | | |||||||||||| ||| |||||||||||| ||||||    
T  13459730 tatgaaaacagcttatgacattttcataaactgttttcagcctattttcataagctctgtaggat 13459666  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 20672805 - 20672769
Alignment:
Q  151 ctgttttcagcttatcttcataagctctctaggatag 187  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  20672805 ctgttttcagcttattttcataagctctccaggatag 20672769  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 17258868 - 17258982
Alignment:
Q  121 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaa 220  Q
    |||||||| | || |||||||||| | |  ||||||||||||||| ||||||||||||  |||||| || ||| ||||| |||||| | || |  |||||    
T  17258868 tatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggata-gtttatgaaaacagcttattgattgtacgaaaa 17258966  T
Q  221 tagtttgactttattt 236  Q
    ||||||||||||||||    
T  17258967 tagtttgactttattt 17258982  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 28586781 - 28586870
Alignment:
Q  151 ctgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttatttcatct 241  Q
    ||||||||||||||| |  |||||||||||||||||| ||  ||||||| |||||||  || | |||||| ||||||||||||||| ||||    
T  28586781 ctgttttcagcttatttcgataagctctctaggatagctc-gtcaaaacagcttataatttatatgaaaacagtttgactttattttatct 28586870  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 12467212 - 12467163
Alignment:
Q  127 aacaactcatgacatgtttagagactgttttcagcttatcttcataagct 176  Q
    ||||||| |||||||||||| |  ||||||||||||||| ||||||||||    
T  12467212 aacaacttatgacatgtttataagctgttttcagcttattttcataagct 12467163  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 31517729 - 31517783
Alignment:
Q  125 aaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctc 179  Q
    |||||||||||||||||||| | |  ||||||||||||||| |||||||||||||    
T  31517729 aaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 2463023 - 2462980
Alignment:
Q  135 atgacatgtttagagactgttttcagcttatcttcataagctct 178  Q
    |||||||||||| |||||||||||||||||| |||| |||||||    
T  2463023 atgacatgtttatagactgttttcagcttattttcacaagctct 2462980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 25479635 - 25479600
Alignment:
Q  152 tgttttcagcttatcttcataagctctctaggatag 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  25479635 tgttttcagcttattttcataagctctctaggatag 25479600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 33975622 - 33975589
Alignment:
Q  154 ttttcagcttatcttcataagctctctaggatag 187  Q
    |||||||||||| |||||||||||||||||||||    
T  33975622 ttttcagcttattttcataagctctctaggatag 33975589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 3223747 - 3223688
Alignment:
Q  126 aaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggata 186  Q
    |||||||| |||||||||||| |   |||||||||||||| ||||||||||| ||||||||    
T  3223747 aaacaacttatgacatgtttataagttgttttcagcttat-ttcataagctcgctaggata 3223688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 37593670 - 37593726
Alignment:
Q  122 atgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctct 178  Q
    ||||| |||||| |||||||||| | |  ||||||||||||||| ||||||||||||    
T  37593670 atgaacacaacttatgacatgttcataagctgttttcagcttattttcataagctct 37593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 19719091 - 19719038
Alignment:
Q  121 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataag 174  Q
    ||||||||||||| |||||||||| | | ||||||||||||||||||| |||||    
T  19719091 tatgaaaacaacttatgacatgttcataaactgttttcagcttatctttataag 19719038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 12234879 - 12234937
Alignment:
Q  126 aaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctagga 184  Q
    |||||||| ||||||||| || |  ||||||||||||||| | ||||||||||||||||    
T  12234879 aaacaacttatgacatgtctataagctgttttcagcttatttccataagctctctagga 12234937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 25670571 - 25670629
Alignment:
Q  121 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctc 179  Q
    ||||||||||||| |||||||||| | | | |||||||||||||| |||| ||||||||    
T  25670571 tatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagctctc 25670629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 21453346 - 21453313
Alignment:
Q  154 ttttcagcttatcttcataagctctctaggatag 187  Q
    |||||||||||||||||| |||||||||||||||    
T  21453346 ttttcagcttatcttcattagctctctaggatag 21453313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 46104552 - 46104609
Alignment:
Q  121 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctct 178  Q
    |||||||||||||||||||||||  | | | ||||| |||||||| ||||||||||||    
T  46104552 tatgaaaacaactcatgacatgtcaataaaatgtttccagcttattttcataagctct 46104609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 41633441 - 41633387
Alignment:
Q  125 aaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctc 179  Q
    ||||||| ||||||||||| || | | |||||||||||||| |||||||||||||    
T  41633441 aaaacaaatcatgacatgtctataaattgttttcagcttattttcataagctctc 41633387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 6483857 - 6483820
Alignment:
Q  150 actgttttcagcttatcttcataagctctctaggatag 187  Q
    |||||||||||||||| || ||||||||||||||||||    
T  6483857 actgttttcagcttattttaataagctctctaggatag 6483820  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 31686336 - 31686414
Alignment:
Q  107 tttgagagaacttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggatag 187  Q
    |||||||||||||||   ||||||||| |||||| ||||| |  ||||||||||||||| | | ||||||||| |||||||    
T  31686336 tttgagagaacttatc--aaaacaacttatgacaagtttataatctgttttcagcttatgtccgtaagctctccaggatag 31686414  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 2027470 - 2027510
Alignment:
Q  201 gcttataggttttgtgaaaatagtttgactttatttcatct 241  Q
    ||||||||||| | |||||||||||||||||||||| ||||    
T  2027470 gcttataggttatatgaaaatagtttgactttattttatct 2027510  T

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