View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_67 (Length: 248)
Name: NF7017_low_67
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 45756869 - 45756810
Alignment:
| Q |
50 |
atattcatagcaaatgttttcccaaaatttaagtttgttagtaccattttgtcctttgtt |
109 |
Q |
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| T |
45756869 |
atattcatagcaaatgttttcccaaaatttaagtttgttagtaccattttgtcctttgtt |
45756810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 45756955 - 45756907
Alignment:
| Q |
6 |
gtgagaagaaccaaacattattgacaaaagtaccatcgaaaagaatatt |
54 |
Q |
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| T |
45756955 |
gtgagaagaaccaaacattattgacaaaagtaccatcgaaaagaatatt |
45756907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 45756782 - 45756699
Alignment:
| Q |
104 |
tttgttacactcacatttgagctctttatgttaccacacgtcca---------cagattcttcactattcataattaattcacc |
178 |
Q |
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| T |
45756782 |
tttgttatactcacatttgagctctttatgttaccacacatccacacctttatcagattctttactattcataattaattcacc |
45756699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 45756657 - 45756629
Alignment:
| Q |
220 |
ctataccatctaccaaccatttttacaac |
248 |
Q |
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| T |
45756657 |
ctataccatctaccaaccatttttacaac |
45756629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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