View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_69 (Length: 244)
Name: NF7017_low_69
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 36717093 - 36717327
Alignment:
| Q |
1 |
cctgcatcaagctgaaaacaccttatggaagtaaagttccaaaaatcatcattgacattgcaaaacttcctgctgctgaagatggtgaatctgagcttct |
100 |
Q |
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| T |
36717093 |
cctgcatcaagctgaaaacaccttatggaagtaaagttccaaaaatcatcattgacattgcaaaacttcctgctgctgaagatggtgaatctgagcttct |
36717192 |
T |
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| Q |
101 |
gactcctcagaagaagctattgcattcaattgatataattgagcgtgaagtgaagcaagagttgatgaaactcaagagaacccctacagccaaaaaagca |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717193 |
gactcctcagaagaagctattgcattcgattgatataattgagcgtgaagtgaagcaagagttgatgaaactcaagagaacccctacagccaaaaaagca |
36717292 |
T |
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| Q |
201 |
gaacatcagaaaagggttaggaccttgatgtccat |
235 |
Q |
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| T |
36717293 |
gaacatcagaaaagggttaggaccttgatgtccat |
36717327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 1482305 - 1482500
Alignment:
| Q |
1 |
cctgcatcaagctgaaaacaccttatggaagtaaagttccaaaaatcatcattgacattgcaaaacttcctgctgctgaagatggtgaatctgagcttct |
100 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
1482305 |
cctgcataaagctgagtacaccttatggaagtaaagttccaaaaatcatcatcgacattgcgaaacttcctgctgctgaagatggtgaatcagagcttct |
1482404 |
T |
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| Q |
101 |
gactcctcagaaga---agctattgcattcaattgatataattgagcgtgaagtgaagcaagagttgatgaaactcaagagaacccctacagccaa |
193 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||| |
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| T |
1482405 |
gactcctcagaagaagcagctattgcattcgattgatataattgagcgtgaagttaagcaatagttgatgaaactaaaaagaacccctacagccaa |
1482500 |
T |
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