View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_71 (Length: 241)
Name: NF7017_low_71
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_71 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 2848406 - 2848182
Alignment:
| Q |
17 |
aaaactcactctcctcaaaactagaccattccataactgagaaacttccaccaacataattagatgacattgaaagagacgaagacgaccaactcttaca |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2848406 |
aaaactcactctcctcaaaactagaccattccgtaactgagcaacttccaccaacagaattagatgacattgaaagagacgaagacgaccaactcttaca |
2848307 |
T |
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| Q |
117 |
agaaccaaactcactcctttccccacaacaacctcctaccttgttttcctcaaacttgaacatgaaaaccgcatgtccatcaccatcattaccaccgttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2848306 |
agaaccaaactcactcctttccccacaacaacctcctacctcgttttcctcaaacttgaacatgaaaaccgcatgtccatcaccatcactaccaccgttt |
2848207 |
T |
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| Q |
217 |
tcaaaaagccaatcatgcacatccc |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
2848206 |
tcaaaaagccaatcatgcacatccc |
2848182 |
T |
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