View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_72 (Length: 238)
Name: NF7017_low_72
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43394690 - 43394467
Alignment:
| Q |
1 |
attacatcgaactcaaggttacannnnnnncattgttttagtgtattagagatttctttcaccctttatatatggttgtgaaagaaacaagggaaaaaac |
100 |
Q |
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| T |
43394690 |
attacatcgaactcaaggttacatttttttcattgttttagtgtattagagatttctttcaccctttatatatggttgtgaaagaaacaagggaaaaaac |
43394591 |
T |
|
| Q |
101 |
agaaaatgtgaagtatgatagtatgagacaaacacaaagaagtgaacaatgtaaaatgatgtagagttaaaccacaccaggcttacaagttacaactata |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43394590 |
agaaaatgtgaagtatgatggtatgagacaaacacaaagaagtgaacaatgtaaaatgatgtagagttaaaccacaccaggcttacaagttacaactata |
43394491 |
T |
|
| Q |
201 |
ctacaatgtcgtcaacacataatt |
224 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
43394490 |
ctacaatgtcgtcaacacacaatt |
43394467 |
T |
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