View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_79 (Length: 224)
Name: NF7017_low_79
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 31787557 - 31787769
Alignment:
| Q |
1 |
aaccacttccagtgttggtacttccatattcagtggttgttccataaccacctacaccacctgcattagatataaatgttagttatattagttaattaca |
100 |
Q |
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| T |
31787557 |
aaccacttccagtgttggtacttccatattcagtggttgttccataaccacctacaccacctgcattagatataattattagttatattagttaattaca |
31787656 |
T |
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| Q |
101 |
aaacatttccctcgtcaacaccgataattatttgaatttcnnnnnnntaaagtaacatgtag------cttgtgtgatttgaatttgaaataaaatgaca |
194 |
Q |
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| T |
31787657 |
acacatttccctcgtcaacaccgataattatttgaatttcaaaaaaataaagtaacatgtagcgacgtcctgtctgatttgaatttgaaacaaaatgaca |
31787756 |
T |
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| Q |
195 |
taattaaatgtaa |
207 |
Q |
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||||||||||||| |
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| T |
31787757 |
taattaaatgtaa |
31787769 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 19930982 - 19930945
Alignment:
| Q |
184 |
ataaaatgacataattaaatgtaagtatatgtgtcgat |
221 |
Q |
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| T |
19930982 |
ataaaatgacataattcaatgtaattatatgtgtcgat |
19930945 |
T |
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