View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_80 (Length: 221)
Name: NF7017_low_80
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_80 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 31236618 - 31236805
Alignment:
| Q |
20 |
atagggcctaaagttaaaaatgttgttgaaaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaatataacactattcgg |
119 |
Q |
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| T |
31236618 |
atagagcctaaagttaaaaatgttgttgaaaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaatataacactattcgg |
31236717 |
T |
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| Q |
120 |
tgattgtgaccattgacttttaatattatgggatacaatcgtaatttgaacaaattacattcttatagattcattcaatacttcattt |
207 |
Q |
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| T |
31236718 |
tgattgtgaccattgacttttaatattatgggatacaatcgtaatttgaacaaattacattcttatagattcattcaacacttcattt |
31236805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 31246010 - 31246197
Alignment:
| Q |
20 |
atagggcctaaagttaaaaatgttgttgaaaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaatataacactattcgg |
119 |
Q |
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|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31246010 |
atagggtctaaaattaaaaatgttgttgaaa-tgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaatataacactatttgg |
31246108 |
T |
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| Q |
120 |
tgattgtgaccattgac-ttttaatattatgggatacaatcgtaatttgaacaaattacattcttatagattcattcaatacttcattt |
207 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||| |
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| T |
31246109 |
tgattgtgaccattgactttttaatattatgggatacaatcgttatttaaacaaattacattctcatagattcattcaacacttcattt |
31246197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 31255164 - 31255270
Alignment:
| Q |
20 |
atagggcctaaagttaaaaatgttgttgaaaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaatataacactattcgg |
119 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||| | |||||| ||||||||| | ||||||||||||| ||||| || || |
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| T |
31255164 |
atagggtctaaaattaaaaatgttgttgaaaatgatgtgcttttg-----------tgtaacgacttggcatattaattttcaaatattacactgtttgg |
31255252 |
T |
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| Q |
120 |
tgattgtgaccattgact |
137 |
Q |
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|||||||||||||||||| |
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| T |
31255253 |
tgattgtgaccattgact |
31255270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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