View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_83 (Length: 201)
Name: NF7017_low_83
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 16147533 - 16147697
Alignment:
| Q |
19 |
cataaaacatactcacattaacattcatagccactggaacaatctcatcggcaagttcggcaaaaagtgaactaaaccttaataaataaggttctctaca |
118 |
Q |
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| T |
16147533 |
cataaaacatactcacattaacattcatagccactggaacaatctcatcagcaagttcagcaaaaagtgaactaaaccttaataaataaggttccctaca |
16147632 |
T |
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| Q |
119 |
agttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttccctat |
183 |
Q |
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| T |
16147633 |
agttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttccctat |
16147697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 16195402 - 16195238
Alignment:
| Q |
19 |
cataaaacatactcacattaacattcatagccactggaacaatctcatcggcaagttcggcaaaaagtgaactaaaccttaataaataaggttctctaca |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16195402 |
cataaaacatactcacattatcattcatagccactggaacaatctcatcagcaatttcagcaaaaagtgaactaaaccttaataaataaggttccctaca |
16195303 |
T |
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| Q |
119 |
agttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttccctat |
183 |
Q |
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| T |
16195302 |
agttgttccttcagggcacacaactaaatcaccttccctaagcaacctttgcattgtttccctat |
16195238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 39975822 - 39975914
Alignment:
| Q |
86 |
tgaactaaaccttaataaataaggttctctacaagttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttc |
178 |
Q |
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| T |
39975822 |
tgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttc |
39975914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 25552844 - 25552961
Alignment:
| Q |
19 |
cataaaacatactcacattaacattcatagccactggaacaatctcatcggcaagttcggcaaaaagtgaactaaaccttaataaataaggttctctaca |
118 |
Q |
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||||||||||||| || ||||||| | ||| || |||||||| ||||| | || || ||||| | | ||||||||||| || |||||||||||||| |
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| T |
25552844 |
cataaaacatactaaccttaacatcaacagcaacaggaacaatatcatcagttagctcagcaaacaaaggactaaaccttagcaagtaaggttctctaca |
25552943 |
T |
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| Q |
119 |
agttgttccttcaggaca |
136 |
Q |
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| T |
25552944 |
agttgttccttctggaca |
25552961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 38792300 - 38792363
Alignment:
| Q |
90 |
ctaaaccttaataaataaggttctctacaagttgttccttcaggacaaacaactaaatcacctt |
153 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| ||| |||| |
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| T |
38792300 |
ctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatcccctt |
38792363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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