View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_low_9 (Length: 547)
Name: NF7017_low_9
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 24781588 - 24781045
Alignment:
| Q |
1 |
ctttcagggatgatcccaaagtctctttttggttcaggaataagtgatttgaacttaagtcataatttgttggagggtaatatacctgatgcatttgggg |
100 |
Q |
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| T |
24781588 |
ctttcggggatgatcccaaagtctctttttggttcaggaataagtgatttgaacttaagtcataatttgttggagggtaatatacctgatgcatttgggg |
24781489 |
T |
|
| Q |
101 |
gtaggtcttattttacttcattggatatttcctataataatctcaagggtcctatacctaaatctatatcttctgctgcttacattggttacatggattt |
200 |
Q |
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| T |
24781488 |
gtaggtcttattttacatcattggatatttcctataataatctcaagggtcctatacctaaatctatatcttctgctgcttacattggttacatggattt |
24781389 |
T |
|
| Q |
201 |
gagccataatcatttgtgtggtccaattcctaaagttttggatcatcttgatgcatcttcgtttgaggtcaatgattgcctttgtggaaagccacttgaa |
300 |
Q |
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| T |
24781388 |
gagccataatcatttgtgtggtccaattcctaaagttttggatcatcttgatgcatcttcgtttgaggtcaatgattgtctttgtggaaagccacttgaa |
24781289 |
T |
|
| Q |
301 |
gcttgcaaaaagaagtaatgtttgccatcaatgtgtctcattggttaatccagctttctctaataattgtcacatttacacacaagagttgtttcaaaaa |
400 |
Q |
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| T |
24781288 |
gcttgcaaaaagaagtaatgtttgccatcaatgtgtctcattggttaatccagctttctctaataattgtcacatttacacac--gagttgtttcaaaaa |
24781191 |
T |
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| Q |
401 |
gtgtcaatttcaatttctaatttagttttaattgannnnnnncttggattatgatatctaattaatactgtgtgtatcatctgttatcattttcaacatt |
500 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24781190 |
gtgtcaatttcaatttctaatttagttttaatttatttttttcttggattatgatatctaattaatactgtgtgtatcatctgttatcattttcaacatt |
24781091 |
T |
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| Q |
501 |
gtatttatgagataattaaaatacaacaatggttattgagaataat |
546 |
Q |
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| T |
24781090 |
gtatttatgagataattaaaatacaacaatggttattgagaataat |
24781045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 41998052 - 41997963
Alignment:
| Q |
133 |
tataataatctcaagggtcctatacctaaatctatatcttctgctgcttacattggttacatggatttgagccataatcatttgtgtggt |
222 |
Q |
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|||||| |||| |||||||||||||||||||| || ||||||| |||| ||||| | |||||||||| ||||||||||||||||| |
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| T |
41998052 |
tataatcatcttaagggtcctatacctaaatcaatgggttctgcttcttatattggacatttggatttgagttataatcatttgtgtggt |
41997963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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