View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7018_low_1 (Length: 621)

Name: NF7018_low_1
Description: NF7018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7018_low_1
NF7018_low_1
[»] chr4 (6 HSPs)
chr4 (1-605)||(10820946-10821537)
chr4 (330-601)||(44721569-44721843)
chr4 (30-300)||(44721933-44722193)
chr4 (486-601)||(34723270-34723385)
chr4 (558-601)||(19614688-19614731)
chr4 (202-300)||(19614436-19614535)
[»] chr7 (3 HSPs)
chr7 (330-601)||(43305144-43305418)
chr7 (30-300)||(43304794-43305054)
chr7 (30-114)||(40354362-40354446)
[»] chr5 (5 HSPs)
chr5 (428-601)||(9162674-9162848)
chr5 (492-601)||(30672004-30672113)
chr5 (211-300)||(9162395-9162487)
chr5 (211-300)||(9162141-9162232)
chr5 (202-314)||(30671765-30671879)
[»] chr8 (3 HSPs)
chr8 (484-597)||(24947121-24947234)
chr8 (486-601)||(11661746-11661861)
chr8 (202-300)||(11662000-11662099)
[»] chr1 (4 HSPs)
chr1 (484-597)||(25345071-25345184)
chr1 (486-601)||(22061438-22061553)
chr1 (484-530)||(25344792-25344838)
chr1 (202-300)||(22061203-22061303)
[»] chr6 (2 HSPs)
chr6 (486-597)||(12866658-12866769)
chr6 (486-601)||(10824985-10825100)


Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 10821537 - 10820946
Alignment:
Q  1 acattttcttgtatactcactactacttctccttctcttcaatcgctgaatgaattagattataaaaaatgggttattggtccagtttgtgaaaatccat 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10821537 acattttcttgtatactcactactacttctccttctctttaatcgctgaatgaattagattataaagaatgggttattggtccagtttgtgaaaatccat 10821438  T
Q  101 gatcaaagtgtgctactagtaaagttttattccttgtaaaaactctttgaatcactttttcccctttgaatcactttggggtcttannnnnnnnaattag 200  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  10821437 gatcagagtgtgctactagtaaagttttattctttgtaaaaactctttgaatcactttttcccctttgaatcactttggggtctta-tttttttaattag 10821339  T
Q  201 cttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttctgtgtatataaaatgtcgattgattttt 300  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10821338 cttgtgaaaatccaggatcaattgttgaattaaatagatttaaaagaatgggttctttgaatcactttcttctgtgtataaaaaatgtcgattgattttt 10821239  T
Q  301 gctttcatcacttatttgatataactatatggtataacttctttgaatcacttcttctctgaatatactattannnnnnnatcagttatgttctatttgt 400  Q
    | |||||||||||||||||             |||||||||||||||||||||||||||||||| | ||||||       ||||||||||||||||||||    
T  10821238 gttttcatcacttatttga-------------tataacttctttgaatcacttcttctctgaatgtgctatta-ttttttatcagttatgttctatttgt 10821153  T
Q  401 atggaaatatgcttgggtannnnnnncttcatataaaaatgttgtttggtaatgacaattgttgattg--cnnnnnnncgtcatataagaatgtatgttt 498  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  10821152 atggaaatatgcttgggtatttttttcttcatataaaaatgttgtttggtaatgacaattgttgattgttttttttttcgtcatataagaatgtatgttt 10821053  T
Q  499 ggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttg 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10821052 ggaatctagtttgtcatagaattatttgttgagttgtatatgaatatttagcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttg 10820953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 330 - 601
Target Start/End: Complemental strand, 44721843 - 44721569
Alignment:
Q  330 tggtataacttcttt---gaatcacttcttctctgaatatactattannnnnnn-atcagttatgttctatttgtatggaaatatgcttgggt-annnnn 424  Q
    |||||||||||||||   |||||||||||||||||||| | ||||||        |||||||||||||||||||| |||||||||| |||||| |         
T  44721843 tggtataacttcttttttgaatcacttcttctctgaatgtgctattattttttttatcagttatgttctatttgtttggaaatatgtttgggttattttt 44721744  T
Q  425 nncttcatataaaaatgttgtttggtaatgacaattgttgattgcnnnnnnncgtcatataagaatgtatgtttggaatctagtttgtcatagaattatt 524  Q
       ||||| |||||||||||||||||||||| |||||||||||         | ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  44721743 tttttcatgtaaaaatgttgtttggtaatgagaattgttgatt--tttttttcttcatataagaatgtaagtttgaaatctcgtttgtcatagaattatt 44721646  T
Q  525 tgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttgaat 601  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  44721645 tattgagttgtatatgaatattttgcaggctgtaaacattcaaactaacgagagtagaatagctgggaatgttgaat 44721569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 300
Target Start/End: Complemental strand, 44722193 - 44721933
Alignment:
Q  30 tccttctcttcaatcgctgaatgaattagattataaaaaatgggtt-attggtccagtttgtgaaaatccatgatcaaagtgtgctactagtaaagtttt 128  Q
    |||||||||||||| | |||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||| |            | |||||||||||    
T  44722193 tccttctcttcaattgttgaatgaattagattagaaagaatgggtttattggtccaatttgtgaaaatccatgttg-----------cgagtaaagtttt 44722105  T
Q  129 attccttgtaaaaactctttgaatcactttttcccctttgaatcactttggggtcttannnnnnnnaattagcttgtgaaaatccatgatcaattgttga 228  Q
     ||| |||| |||||||||||||||||||||||||||||||||||||||  | ||||          ||||| ||||| ||||||||||||||||| |||    
T  44722104 cttctttgtgaaaactctttgaatcactttttcccctttgaatcactttcagatctt-tctttttttattagtttgtg-aaatccatgatcaattgctga 44722007  T
Q  229 attaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt 300  Q
    |||| |  ||||  |||||| ||||| ||||||||||||| |||  |||||||| | ||||| |||||||||||    
T  44722006 attatatagattagaaagaaagggttatttgaatcactttattctttgtgtataaataatgttgattgattttt 44721933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 486 - 601
Target Start/End: Original strand, 34723270 - 34723385
Alignment:
Q  486 agaatgtatgtttggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaata 585  Q
    ||||| |||||||| |||||  ||||| ||||||||||||||| | | |||| || ||| ||||||||||| |||||||||||||||| |||||||||||    
T  34723270 agaatttatgtttgaaatcttctttgttatagaattatttgttaattcgtatgtgtatactttgcaggctgaaaacactcaaactaataagagtagaata 34723369  T
Q  586 gctgggaatgttgaat 601  Q
    ||||||||||||||||    
T  34723370 gctgggaatgttgaat 34723385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 558 - 601
Target Start/End: Original strand, 19614688 - 19614731
Alignment:
Q  558 aaacactcaaactaatgagagtagaatagctgggaatgttgaat 601  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  19614688 aaacattcaaactaatgagagtagaatagctgggaatgttgaat 19614731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 19614436 - 19614535
Alignment:
Q  202 ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc-tgtgtatataaaatgtcgattgattttt 300  Q
    |||| |||||||||||||||| ||||||| |||  ||||  ||||||   ||||||||| |||||| |||| |||||||| ||||||| |||||||||||    
T  19614436 ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagaacaagttctttgattcacttacttcttgtgtataaaaaatgttgattgattttt 19614535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 3e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 330 - 601
Target Start/End: Original strand, 43305144 - 43305418
Alignment:
Q  330 tggtataacttcttt---gaatcacttcttctctgaatatactattannnnnnn-atcagttatgttctatttgtatggaaatatgcttgggt-annnnn 424  Q
    |||||||||||||||   |||||||||||||||||||| | ||||||        |||||||||||||||||||| |||||||||| |||||| |         
T  43305144 tggtataacttcttttttgaatcacttcttctctgaatgtgctattattttttttatcagttatgttctatttgtttggaaatatgtttgggttattttt 43305243  T
Q  425 nncttcatataaaaatgttgtttggtaatgacaattgttgattgcnnnnnnncgtcatataagaatgtatgtttggaatctagtttgtcatagaattatt 524  Q
       ||||| |||||||||||||||||||||| |||||||||||         | ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  43305244 tttttcatgtaaaaatgttgtttggtaatgagaattgttgatt--tttttttcttcatataagaatgtaagtttgaaatctcgtttgtcatagaattatt 43305341  T
Q  525 tgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttgaat 601  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  43305342 tattgagttgtatatgaatattttgcaggctgtaaacattcaaactaacgagagtagaatagctgggaatgttgaat 43305418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 300
Target Start/End: Original strand, 43304794 - 43305054
Alignment:
Q  30 tccttctcttcaatcgctgaatgaattagattataaaaaatgggtt-attggtccagtttgtgaaaatccatgatcaaagtgtgctactagtaaagtttt 128  Q
    |||||||||||||| | |||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||| |            | |||||||||||    
T  43304794 tccttctcttcaattgttgaatgaattagattagaaagaatgggtttattggtccaatttgtgaaaatccatgttg-----------cgagtaaagtttt 43304882  T
Q  129 attccttgtaaaaactctttgaatcactttttcccctttgaatcactttggggtcttannnnnnnnaattagcttgtgaaaatccatgatcaattgttga 228  Q
     ||| |||| |||||||||||||||||||||||||||||||||||||||  | ||||          ||||| ||||| ||||||||||||||||| |||    
T  43304883 cttctttgtgaaaactctttgaatcactttttcccctttgaatcactttcagatctt-tctttttttattagtttgtg-aaatccatgatcaattgctga 43304980  T
Q  229 attaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt 300  Q
    |||| |  ||||  |||||| ||||| ||||||||||||| |||  |||||||| | ||||| |||||||||||    
T  43304981 attatatagattagaaagaaagggttatttgaatcactttattctttgtgtataaataatgttgattgattttt 43305054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 40354446 - 40354362
Alignment:
Q  30 tccttctcttcaatcgctgaatgaattagattataaaaaatgggttattggtccagtttgtgaaaatccatgatcaaagtgtgct 114  Q
    |||||||||||| ||||||||| |||||||||| ||  ||||| || |||||||| ||||||||||| |||||||||||||||||    
T  40354446 tccttctcttcagtcgctgaattaattagattagaatgaatggatttttggtccaatttgtgaaaattcatgatcaaagtgtgct 40354362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 1e-52; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 428 - 601
Target Start/End: Original strand, 9162674 - 9162848
Alignment:
Q  428 ttcatataaaaatgttgtttggtaatgacaattgttgattgcnnnnnnn-cgtcatataagaatgtatgtttggaatctagtttgtcatagaattatttg 526  Q
    ||||| |||||||||||||||||||||||||||||||||||         | ||||||||||||||| ||||||||||| |||||||||||||||||||     
T  9162674 ttcatgtaaaaatgttgtttggtaatgacaattgttgattgtttttttttcttcatataagaatgtaagtttggaatcttgtttgtcatagaattattta 9162773  T
Q  527 ttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttgaat 601  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||    
T  9162774 ttgagttgtatatgaatattttgcaggctataaactttcaaactaacgagagtagaatagctgggaatgttgaat 9162848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 492 - 601
Target Start/End: Original strand, 30672004 - 30672113
Alignment:
Q  492 tatgtttggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctggg 591  Q
    |||||||| |||||  ||||| ||||||||||||||| | | |||| || ||| ||||||||||| |||||||||||||||| |||||||||||||||      
T  30672004 tatgtttgaaatcttctttgttatagaattatttgttaattcgtatgtgtatactttgcaggctgaaaacactcaaactaataagagtagaatagctgaa 30672103  T
Q  592 aatgttgaat 601  Q
    ||||||||||    
T  30672104 aatgttgaat 30672113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 9162395 - 9162487
Alignment:
Q  211 tccatgatcaa-ttgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt 300  Q
    ||||||||||| |||||||||||||  ||||  |||||| ||||| ||||||||||||| |||  |||||||| | ||||| |||||||||||    
T  9162395 tccatgatcaaattgttgaattaaatagattagaaagaaagggttatttgaatcactttattctttgtgtataaataatgttgattgattttt 9162487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 9162141 - 9162232
Alignment:
Q  211 tccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt 300  Q
    |||||||||||||| |||||||||  ||||  |||||| || || ||||||||||||| |||  |||||||| | ||||| |||||||||||    
T  9162141 tccatgatcaattgctgaattaaatagattagaaagaaaggattatttgaatcactttattctttgtgtataaataatgttgattgattttt 9162232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 314
Target Start/End: Original strand, 30671765 - 30671879
Alignment:
Q  202 ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttct--gtgtatataaaatgtcgattgatttt 299  Q
    |||| |||||||||||||||| ||||||| |||  ||||  |||||    ||||||||| |||||| |||||  ||||||| ||||||| ||||||||||    
T  30671765 ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagatcaagttctttgattcacttgcttctttgtgtataaaaaatgttgattgatttt 30671864  T
Q  300 tgctttcatcactta 314  Q
    |  ||| ||||||||    
T  30671865 tttttttatcactta 30671879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 484 - 597
Target Start/End: Original strand, 24947121 - 24947234
Alignment:
Q  484 taagaatgtatgtttggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaa 583  Q
    |||||||| ||||||||||| |  ||||||||| ||||||||||||||| ||||||| |||||||||| |||| ||||| ||||||||| ||||||||||    
T  24947121 taagaatgaatgtttggaatttgctttgtcatataattatttgttgagtcgtatatggatattttgcaagctgaaaacattcaaactaaagagagtagaa 24947220  T
Q  584 tagctgggaatgtt 597  Q
    ||||||||||||||    
T  24947221 tagctgggaatgtt 24947234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 486 - 601
Target Start/End: Complemental strand, 11661861 - 11661746
Alignment:
Q  486 agaatgtatgtttggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaata 585  Q
    ||||| ||||||||||||||  ||||| ||||||||||||||| | | |||| || ||| ||||||||||| ||||| ||||||||||||||||||||||    
T  11661861 agaatttatgtttggaatcttctttgttatagaattatttgttaattcgtatgtgtatactttgcaggctgaaaacattcaaactaatgagagtagaata 11661762  T
Q  586 gctgggaatgttgaat 601  Q
    ||||||||||||||||    
T  11661761 gctgggaatgttgaat 11661746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 11662099 - 11662000
Alignment:
Q  202 ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc-tgtgtatataaaatgtcgattgattttt 300  Q
    |||| |||||||||||||||| ||||||| |||  ||||  ||||||   ||||||||| |||||| |||| |||||||| ||||||| |||||||||||    
T  11662099 ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagaacaagttctttgattcacttacttcttgtgtataaaaaatgttgattgattttt 11662000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 484 - 597
Target Start/End: Original strand, 25345071 - 25345184
Alignment:
Q  484 taagaatgtatgtttggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaa 583  Q
    |||||||| ||||||||||| |  ||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||| |||||||||||||||    
T  25345071 taagaatgaatgtttggaatttgctttgtcatagaattatttgttgagtcgtatatggatattttgcaggctgaaaacattcaatctaatgagagtagaa 25345170  T
Q  584 tagctgggaatgtt 597  Q
    | | ||||||||||    
T  25345171 tggttgggaatgtt 25345184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 486 - 601
Target Start/End: Original strand, 22061438 - 22061553
Alignment:
Q  486 agaatgtatgtttggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaata 585  Q
    ||||| |||||||||||| |  ||||| ||||||||||||||| | | |||| || ||| ||||||| ||| ||||| |||||||||||||| |||||||    
T  22061438 agaatttatgtttggaatattctttgttatagaattatttgttaattcgtatgtgtatactttgcagactgaaaacattcaaactaatgagattagaata 22061537  T
Q  586 gctgggaatgttgaat 601  Q
    ||||||||||||||||    
T  22061538 gctgggaatgttgaat 22061553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 530
Target Start/End: Original strand, 25344792 - 25344838
Alignment:
Q  484 taagaatgtatgtttggaatctagtttgtcatagaattatttgttga 530  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||    
T  25344792 taagaatgaatgtttggaatttactttgtcatagaattatttgttga 25344838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 22061203 - 22061303
Alignment:
Q  202 ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgatttt 299  Q
    |||| |||||||||||||||| ||||||| |||  ||||  ||||||   ||||||||| |||||| ||||  | |||||| ||||||| ||||||||||    
T  22061203 ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagaacaagttctttgattcacttacttctttatgtataaaaaatgttgattgatttt 22061302  T
Q  300 t 300  Q
    |    
T  22061303 t 22061303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 486 - 597
Target Start/End: Complemental strand, 12866769 - 12866658
Alignment:
Q  486 agaatgtatgtttggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaata 585  Q
    |||||| ||||||| ||| |  ||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||| | ||||||||||||||||||||||    
T  12866769 agaatgaatgtttgaaatttgctttgttatagaattatttgttgagtcgtatatggatattttgcaggctgaaaatattcaaactaatgagagtagaata 12866670  T
Q  586 gctgggaatgtt 597  Q
    ||||||||||||    
T  12866669 gctgggaatgtt 12866658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 486 - 601
Target Start/End: Complemental strand, 10825100 - 10824985
Alignment:
Q  486 agaatgtatgtttggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaata 585  Q
    ||||| ||||||| ||||||  ||| | ||||||||||||||| | | |||| || | | ||||||| ||| ||||| ||||||||||||||||||||||    
T  10825100 agaatttatgtttcgaatcttctttattatagaattatttgttaattcgtatgtgtacactttgcagactgaaaacattcaaactaatgagagtagaata 10825001  T
Q  586 gctgggaatgttgaat 601  Q
    ||||||||||||||||    
T  10825000 gctgggaatgttgaat 10824985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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