View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7018_low_3 (Length: 383)
Name: NF7018_low_3
Description: NF7018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7018_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 2228851 - 2229218
Alignment:
| Q |
1 |
catgcttgcagtaaaggagattcatcttctttaacaactactgctggaaatggaaggtggaataataggtttatggctgctttggcttcaagaaatggtc |
100 |
Q |
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| T |
2228851 |
catgcttgcagtaaaggagattcatcttctttaacaactactgctggaaatggaaggtggaataataggtttatggctgctttggcttcaagaaatggtc |
2228950 |
T |
|
| Q |
101 |
aagattgtggcaaaaaatctggacctcgttctactacttctcctcctagtaatccttctgttaaggcttgttgattcaatatggttaataacttaatgtg |
200 |
Q |
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| T |
2228951 |
aagattgtggcaaaaaatctggatctcgttctactacttctcctcctagtaatccttctgttaaggcttgttgattcgatatggctaataacttaatgtg |
2229050 |
T |
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| Q |
201 |
taatacaggtgattcttgctctgtttgatgtatgttgaatgatacactgcttttttaagtgcaattttaatgttcaaacttacattacatct-aaaaata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2229051 |
taatacaggtgattcttgctctgtttgatgtatgttgaatgatacactgcttttttaagtgcaattttaatgttcaaacttacattacatctaaaaaata |
2229150 |
T |
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| Q |
300 |
ctatatatagtttctccgatgttagagtctctttatctctcagccgttagattaatcaaatgacaacaat |
369 |
Q |
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||||| |||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2229151 |
ctataaatagtttctcagacgttaga--ctctttatctctcagccgttagattaatcaaatgacaacaat |
2229218 |
T |
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