View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7019_high_1 (Length: 814)
Name: NF7019_high_1
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 173 - 434
Target Start/End: Complemental strand, 12754797 - 12754536
Alignment:
| Q |
173 |
caacagggagctgggcttgctaaccttggtaacacatgctttctcaattcaattatgcaatgcttcacgcataccgtgcccctagttgagggtcttcttt |
272 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12754797 |
caacagggagctgggcttgccaaccttggtaacacatgctttctcaattcaattatgcaatgcttcacgcataccgtgcccctagttgagggtcttcttt |
12754698 |
T |
|
| Q |
273 |
tgagctgccattctcctaatgatggtgagttacacttgatagaatttaatggtgtcattctttttgaacaatttagctttagtttgatgggtaaaaacat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
12754697 |
tgagctgccattctcctaatgatggtgagttacacttgattgaatttaatggtgtcattctttttgaacaatttggctttagtttgatgggtaaaaacgt |
12754598 |
T |
|
| Q |
373 |
aaagttgtgttattatacaacgcggttgtgctattgtttgggtttagatgtgagtaagagga |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12754597 |
aaagttgtgttattatacaacgcggttgtgctattgttttggtttagatgtgagtaagagga |
12754536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 173 - 434
Target Start/End: Complemental strand, 12817759 - 12817498
Alignment:
| Q |
173 |
caacagggagctgggcttgctaaccttggtaacacatgctttctcaattcaattatgcaatgcttcacgcataccgtgcccctagttgagggtcttcttt |
272 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12817759 |
caacagggagctgggcttgccaaccttggtaacacatgctttctcaattcaattatgcaatgcttcacgcataccgtgcccctagttgagggtcttcttt |
12817660 |
T |
|
| Q |
273 |
tgagctgccattctcctaatgatggtgagttacacttgatagaatttaatggtgtcattctttttgaacaatttagctttagtttgatgggtaaaaacat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
12817659 |
tgagctgccattctcctaatgatggtgagttacacttgattgaatttaatggtgtcattctttttgaacaatttggctttagtttgatgggtaaaaacgt |
12817560 |
T |
|
| Q |
373 |
aaagttgtgttattatacaacgcggttgtgctattgtttgggtttagatgtgagtaagagga |
434 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12817559 |
aaagttgtgttattatacaacgcggttgtgctattgttttggtttagatgtgagtaagagga |
12817498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 581 - 791
Target Start/End: Complemental strand, 12817363 - 12817153
Alignment:
| Q |
581 |
caggtcataatgggttctgtgttatctgtgctttccgctatcagatgaaacagtccttggagtctactggaagagtcatctcccctgcggtatttgtgga |
680 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12817363 |
caggtcataatgggttctgtgttatctgtgctttccgctatcagatgaaacagtccttggagtctactggaagagtcatctcccctgtggtatttgtgga |
12817264 |
T |
|
| Q |
681 |
taatttgaagcgtatccttaataccatattcatggaaactttcttattcttgcatatcttttcaatgaaaggatttagaattgtctgtcattaattggta |
780 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12817263 |
taatttgaagcgtatcctaaataccatattcatggaaactttcttattcttgcatatcttttcaatgaaaggatttagaattgtctgtcattaattggta |
12817164 |
T |
|
| Q |
781 |
aaatagtagtg |
791 |
Q |
| |
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||||||||||| |
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| T |
12817163 |
aaatagtagtg |
12817153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 581 - 791
Target Start/End: Complemental strand, 12754401 - 12754193
Alignment:
| Q |
581 |
caggtcataatgggttctgtgttatctgtgctttccgctatcagatgaaacagtccttggagtctactggaagagtcatctcccctgcggtatttgtgga |
680 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12754401 |
caggtcataatgggttctgtgttatctgtgctttccgctatcagatgaaacagtccttggagtctactggaagagtcatctcccctgtggtatttgtgga |
12754302 |
T |
|
| Q |
681 |
taatttgaagcgtatccttaataccatattcatggaaactttcttattcttgcatatcttttcaatgaaaggatttagaattgtctgtcattaattggta |
780 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12754301 |
taatttgaagcgtatcctaaataccatattcatggaaactttcttattcttgcatatcttttcaatgaaaggatttagaattgtctg--attaattggta |
12754204 |
T |
|
| Q |
781 |
aaatagtagtg |
791 |
Q |
| |
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||||||||||| |
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| T |
12754203 |
aaatagtagtg |
12754193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 12754949 - 12754859
Alignment:
| Q |
21 |
tgcctgtgattttgtattagtaattgtatctgtgttgtgttagtgttatctaccgatacttgttagacaccagacacacctttaatatcaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12754949 |
tgcctgtgattttgtattagtaattgtatctgtgttgtgttagtgttatctaccgatacttgttagacaccagacacacctttaatatcaa |
12754859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 12817910 - 12817827
Alignment:
| Q |
21 |
tgcctgtgattttgtattagtaattgtatctgtgttgtgttagtgttatctaccgatacttgttagacaccagacacaccttta |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12817910 |
tgcctgtgattttgtattagtaattgtatctgtgttgtgttagtgttatctaccgatacttgttagacaccagacacaccttta |
12817827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 182 - 298
Target Start/End: Original strand, 7773045 - 7773161
Alignment:
| Q |
182 |
gctgggcttgctaaccttggtaacacatgctttctcaattcaattatgcaatgcttcacgcataccgtgcccctagttgagggtcttcttttgagctgcc |
281 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||| || |||||| ||| | || ||| |
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| T |
7773045 |
gctggacttgctaaccttggtaacacatgctttctcaattcaatcatgcaatgcttcaatcatacagtgcctctagtcgaaggtcttttttcgtgcagcc |
7773144 |
T |
|
| Q |
282 |
attctcctaatgatggt |
298 |
Q |
| |
|
|| || |||||||||| |
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| T |
7773145 |
atgcttgtaatgatggt |
7773161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 182 - 298
Target Start/End: Original strand, 7766910 - 7767026
Alignment:
| Q |
182 |
gctgggcttgctaaccttggtaacacatgctttctcaattcaattatgcaatgcttcacgcataccgtgcccctagttgagggtcttcttttgagctgcc |
281 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||| ||||| || |||||| || | || ||| |
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| T |
7766910 |
gctggacttgccaaccttggtaacacatgctttctcaattcgatcatgcaatgcttcattcatacggtgcctctagtcgaaggtctttttacgtgcagcc |
7767009 |
T |
|
| Q |
282 |
attctcctaatgatggt |
298 |
Q |
| |
|
|| || ||||||||||| |
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| T |
7767010 |
atgcttctaatgatggt |
7767026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 7777892 - 7777996
Alignment:
| Q |
194 |
aaccttggtaacacatgctttctcaattcaattatgcaatgcttcacgcataccgtgcccctagttgagggtcttcttttgagctgccattctcctaatg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||| ||||| || |||||| ||| | || ||||| || ||||| |
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| T |
7777892 |
aaccttggtaacacatgctttctcaattcgatcatgcaatgcttcactcatacagtgcctctagtcgaaggtcttttttcgtgcagccatgcttgtaatg |
7777991 |
T |
|
| Q |
294 |
atggt |
298 |
Q |
| |
|
||||| |
|
|
| T |
7777992 |
atggt |
7777996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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