View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7019_high_15 (Length: 310)
Name: NF7019_high_15
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 36941355 - 36941647
Alignment:
| Q |
16 |
agatgtcattacccccaccaccacacacaaatcataaaactatatgaaaggaaaatgttatacaaagtctaccattaagattaaacgtgtaatttccatg |
115 |
Q |
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| T |
36941355 |
agatgtcattacccccaccaccacacacaaatcataaaactatatgaaaggaaaatgttatacaaagtctaccgttaagattaaacgtgtaatttccatg |
36941454 |
T |
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| Q |
116 |
tgtttttaagcaaaatctgaagtaaaaacaacaatgataaaaactcacatgctcaacacttatagcatatttgggattgcttttgcataatccaaatgac |
215 |
Q |
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| T |
36941455 |
tgtttttaagcaaaatctgaagtaaaaacaacaatgataaaaactcacatgctcaacacttatagcatatttgggattgcttttgcataatccaaatgac |
36941554 |
T |
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| Q |
216 |
atgaaaaacaaatga--agaatatgtagtgaaattgctttaattgatagagtttcttctgacccccacaaactactactacttcttctcactc |
306 |
Q |
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| T |
36941555 |
atgaaaaacaaatgaagagaatatgcagtgaaattgctttaattgatagagtttcttctgacccccacaaactactactacttcctctaactc |
36941647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 100 - 306
Target Start/End: Original strand, 36944577 - 36944782
Alignment:
| Q |
100 |
acgtgtaatttccatgtgtttttaagcaaaatctgaagtaaaaacaacaatgataaaaactcacatgctcaacacttatagcatatttgggattgctttt |
199 |
Q |
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| T |
36944577 |
acgtgtaatttccatatgtttttaagcaaaatctgaagtaataacaagaatgataaaaactcacatgctcatcacttatagcatatttgggattgctttt |
36944676 |
T |
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| Q |
200 |
gcataatccaaatgacatgaaaaacaaatgaagaatatgtagtgaaattgctttaattgatagagtttcttctgacccccacaaactactactacttctt |
299 |
Q |
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| T |
36944677 |
gcataatccaaatcacatgaaaaacaaataaagaatatgaagtgaagttgatttaattgatagagtttcttct-aaccccacaaactactactacttcct |
36944775 |
T |
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| Q |
300 |
ctcactc |
306 |
Q |
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|| |||| |
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| T |
36944776 |
ctaactc |
36944782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 33629543 - 33629583
Alignment:
| Q |
96 |
ttaaacgtgtaatttccatgtgtttttaagcaaaatctgaa |
136 |
Q |
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| T |
33629543 |
ttaaatgtgtaatttccatgtgttttcaagcaaaatctgaa |
33629583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 56061751 - 56061808
Alignment:
| Q |
96 |
ttaaacgtgtaatttccatgtgtttttaagcaaaatctgaagtaaaaacaacaatgat |
153 |
Q |
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| T |
56061751 |
ttaaatgtgaaatttctatatgtttttaagcaaaaactgaagtgaaaacaacattgat |
56061808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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