View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7019_high_19 (Length: 215)
Name: NF7019_high_19
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 31426872 - 31427059
Alignment:
| Q |
18 |
atcgacaaccccgcaaattacccaagtgttaacaacagagcttacaatgtggtgtattggttaaagcctgatgaagaagcttccaccaagattgctgtag |
117 |
Q |
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| T |
31426872 |
atcgacaaccccgcaaattacccaagtgttaacaacagagcttacaatgtggtgtattggttaaagcctgatgaagaagcttccaccaagattgctgtag |
31426971 |
T |
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| Q |
118 |
gtgttaaccctgaatggaatcaagatgatatggtcgtgttagagaatcttgatgatgaagtttttctgaatgttgaggtacacaggtt |
205 |
Q |
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| T |
31426972 |
gtgttaaccctgaatggaatcaagatgatatggtcgtgttagagaatcttgatgatgaagtttttctgaatgttgaggtacagaggtt |
31427059 |
T |
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Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 7171833 - 7172020
Alignment:
| Q |
18 |
atcgacaaccccgcaaattacccaagtgttaacaacagagcttacaatgtggtgtattggttaaagcctgatgaagaagcttccaccaagattgctgtag |
117 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7171833 |
atcgacaaccccacaaattatccaagtgttaacaacagagcttacaatgtggtgtactggttaaagcctgatgaagaagcttccaccaagattgcggtag |
7171932 |
T |
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| Q |
118 |
gtgttaaccctgaatggaatcaagatgatatggtcgtgttagagaatcttgatgatgaagtttttctgaatgttgaggtacacaggtt |
205 |
Q |
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| T |
7171933 |
gtgttaaccctgaaaggaatcaagatgatatgatcgtgttagagaatcttgatgatgaagtttttctgaatgttgaggtacagaggtt |
7172020 |
T |
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