View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7019_high_3 (Length: 603)
Name: NF7019_high_3
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Original strand, 18347605 - 18348176
Alignment:
| Q |
17 |
ttctcatctatatagagtgaagttaaagatgacttgcagtttatcaagaa-aattcaacatggatagttggggatagtaaacatatcaatttctggtatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18347605 |
ttctcatctatatagagtgaagttaaagatgacttgcagtttatcaagaacaattcaacatggatagttggggatggtaaacatatcaatttctggtatg |
18347704 |
T |
|
| Q |
116 |
atttttggtgtgatggaagcataagccagctgctcaacattcatgaccagttaatcttgcagtacattgataaagtggaacaatttgtgtacaaccaaag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18347705 |
atttttggtgtgatggaagcataagccagctgctcaacattcatgaccagttaatcttgcagtaccttgataaagtggaacaatttgtgtacaaccaaag |
18347804 |
T |
|
| Q |
216 |
atggaacattcctgaagacttacatcagttgtatcctaatttgagatcaattgtttcaaaggtaacccttgcctatctcagtaaatctgatgccctggtc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18347805 |
atggaacattcctgaagacttacatcagttgtatcctaatttgagatcaattgtttcaaaggtaacccttgccaatctcagtaaatctgatgccctggtc |
18347904 |
T |
|
| Q |
316 |
tagaaacatagtgcaccaggtgatctaacattgaaagatgcttatgctttcaaaaaacatgttttccctaagattctttgggctaaacacatttggtcta |
415 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18347905 |
tggaaacatagtgcaccaggtgatctaacattgaaagatgcttatgctttcaaaaaacatgtttttcctaagattctttgggctaaacacatttggtcta |
18348004 |
T |
|
| Q |
416 |
aagatattcccccttccaaatcattatttgtttggagattgatgttgaacaagctacctaaagatgataatcttgactcaagaggttgccaaattccgtc |
515 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18348005 |
aagatattcccccttccaaatcattagtagtttggagattgatgttgaacaagctacctacagatgataatcttgactcaagaggttgccaaattccctc |
18348104 |
T |
|
| Q |
516 |
catgtgttctatgtgtatgaatcaagtggaaacttcttttcatttgttttttgattgcccatatgctattgt |
587 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348105 |
cgtgtgttctatgtgtatgaatcaagtggaaacttcttttcatttgttttttgattgcccatatgctattgt |
18348176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 13139871 - 13139782
Alignment:
| Q |
348 |
gaaagatgcttatgctttcaaaaaacatgttttccctaagattctttgggctaaacacatttggtctaaagatattcccccttccaaatc |
437 |
Q |
| |
|
||||||||| |||||||| ||||||||| || || |||||| ||||| |||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
13139871 |
gaaagatgcatatgcttttaaaaaacatcactttcccaagattaagtgggcaaaactcatttggtcaaaggatattcccccttccaaatc |
13139782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 24558571 - 24558482
Alignment:
| Q |
348 |
gaaagatgcttatgctttcaaaaaacatgttttccctaagattctttgggctaaacacatttggtctaaagatattcccccttccaaatc |
437 |
Q |
| |
|
||||||||| |||||||| ||||||||| || || |||||| ||||| |||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
24558571 |
gaaagatgcatatgcttttaaaaaacatcactttcccaagattaagtgggcaaaactcatttggtcaaaggatattcccccttccaaatc |
24558482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University