View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7019_high_6 (Length: 489)
Name: NF7019_high_6
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 278 - 468
Target Start/End: Original strand, 19728142 - 19728332
Alignment:
| Q |
278 |
ttgaagctcgtaagttgctggctgccacaaaccaaaaatagatgctagagtgggatattaattaacatgagtatataacaacaacatagataaaatggta |
377 |
Q |
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| T |
19728142 |
ttgaagctcgtaagttgctggctgccacaaaccaaaaatagatgctacagtgggatattaattaacatgagtacataacaacaacatggataaaatggta |
19728241 |
T |
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| Q |
378 |
attataccaattagctaatctcctctctcttttctttgctctgatggagagaaaccaaaaaattaaaatttggtctctcctatttctctct |
468 |
Q |
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| T |
19728242 |
attataccaattagctagtctcctctctcttttctttgctgtgatggagagaaaccaaaaagttaaaatttggtctctcctatttctctct |
19728332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 19727918 - 19728051
Alignment:
| Q |
55 |
ggcaagttttatgaattgactaataagcccctccctaaaaatatatctaatcaaaaaagtactt-caacnnnnnnnnagggaaaatttacttcaacttag |
153 |
Q |
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| T |
19727918 |
ggcaagttttatgaattgactaataaacccctacctaaaaatatatctaatcaaaaaaatacttccaactttttttcagggaaaatttacttcaacttaa |
19728017 |
T |
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| Q |
154 |
aaaatatttgtttgtgaaatttaatctatgtaag |
187 |
Q |
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| T |
19728018 |
aaattatttttttgtgaaatttaatctatgtaag |
19728051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 8970061 - 8970188
Alignment:
| Q |
61 |
ttttatgaattgactaataagcccctccctaaaaatatatctaatcaaaaaagtacttcaac--nnnnnnnnagggaaaatttacttcaacttagaaaat |
158 |
Q |
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| T |
8970061 |
ttttatgaattgactaataaacccctacctaaaattatatctaatcaaaaaa-tacttcaacttttttttttagagaaaaaatacttcaacttaaaatat |
8970159 |
T |
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| Q |
159 |
atttgtttgtgaaatttaatctatgtaag |
187 |
Q |
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| T |
8970160 |
tcttgtttgtgaaatttaatctatgtaag |
8970188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 7591553 - 7591503
Alignment:
| Q |
61 |
ttttatgaattgactaataagcccctccctaaaaatatatctaatcaaaaa |
111 |
Q |
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| T |
7591553 |
ttttatgaattgactaataagcccctacctaaaattatatctaatcaaaaa |
7591503 |
T |
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