View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7019_high_7 (Length: 484)
Name: NF7019_high_7
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 20 - 476
Target Start/End: Complemental strand, 40130524 - 40130068
Alignment:
| Q |
20 |
attttgatcattgcctcttaaatttcttctttttcaagtaagcaaactgaaagtgacactaaagtttgttgtgtattgaatatgcagatctttcatggga |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40130524 |
attttggtcattgcctcttaaatttcttctttttcaagtaagcaaattgaaagtgacactaaagtttgttgtgtattgaatatgcagatctttcatggga |
40130425 |
T |
|
| Q |
120 |
aacagattgtcagggccattccctacagttctcaccaatattacaaccctcaaaaacttgtatgttatattatttctttattttcaaacatgagtaaatc |
219 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40130424 |
aacagattttcagggccattccctacagttctcaccaatattacaaccctcaaaaacttgtatgttatattatttctttattttcaaacatgagtaaatc |
40130325 |
T |
|
| Q |
220 |
ctcactttggtcctcgagattataaacatcgaacataaagataaatccaatgtttttaaaagaaaatcaggaaagaaaaaagggattatctcaactgctt |
319 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40130324 |
ctcactttggtcctcgagtttataaacgtcgaacataaagataaatccaatgtttttaaaagaaaatcaggaaagaaaaaagggattatctcaactgctt |
40130225 |
T |
|
| Q |
320 |
tgtttaaataacataatacttgtatgaatgttacagaagtattgaaggaaatcaattttcaggctttattcctgaagacatagggaagctgatcaactta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40130224 |
tgtttaaataacataatacttgtatgaatgttacagaagtattgaaggaaatcaattttcaggctttattcctgaagacatagggaagctgatcaactta |
40130125 |
T |
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| Q |
420 |
gaaaaactgtaattcttctgaaactcccgtcttcttattgtaatcatagtctctgct |
476 |
Q |
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| T |
40130124 |
gaaaaactgtaattcttctgaaactcccgtcttcttattgtaatcatagtctctgct |
40130068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 39490034 - 39490124
Alignment:
| Q |
31 |
tgcctcttaaatttcttctttttcaagtaagcaaactgaaagtgacactaaagtttgttgtgtattgaatatgcagatctttcatgggaaacagat |
126 |
Q |
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|||||||||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||||||| |||||||| || ||| |||||||| |||| |
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| T |
39490034 |
tgcctcttaagtttcttctttttcaactaa----actaaaa-tgacactaaagtttgttgtgtattcaatatgcacatttttaatgggaaatagat |
39490124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 39501224 - 39501314
Alignment:
| Q |
31 |
tgcctcttaaatttcttctttttcaagtaagcaaactgaaagtgacactaaagtttgttgtgtattgaatatgcagatctttcatgggaaacagat |
126 |
Q |
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|||||||||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||||||| |||||||| || ||| |||||||| |||| |
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| T |
39501224 |
tgcctcttaagtttcttctttttcaactaa----actaaaa-tgacactaaagtttgttgtgtattcaatatgcacatttttaatgggaaatagat |
39501314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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