View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7019_high_8 (Length: 445)
Name: NF7019_high_8
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 34431805 - 34431393
Alignment:
| Q |
18 |
ctttgttcatttttaagcctgtttttacatgtcattctatgtcaccattttctttattttcaccatctttgtcatgttcatcttcttccactactccatt |
117 |
Q |
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| T |
34431805 |
ctttgttcatttttaagcctgtttttacatgtcattctatgtcaccattttctttattttcaccatctttgtcatgttcatcttcttccactactccatt |
34431706 |
T |
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| Q |
118 |
atcaaatgagacaaggagtagtacttgtgattcagtggagggccgtagtgtcagtgattcattatcatcctcatcagagtattgcttgtttctatatgct |
217 |
Q |
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| T |
34431705 |
atcaaatgagacaaggagtagtacttgtgattcagtggagggccgtagtgtcagtgattcattatcatcctcatcagagtattgcttgtttctatatgct |
34431606 |
T |
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| Q |
218 |
tggaaggttgaatgaaaagtatgtatcatatcatatatctcatccgaatggtgaatttgacagaatcacgataacattataattttgttcaatagttttt |
317 |
Q |
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| T |
34431605 |
tggaaggttgaatgaaaagtatgtatcatatcatatatctcatccgaatggtgaatttgacaaaatcacgataacattataattttgttttatagttttt |
34431506 |
T |
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| Q |
318 |
gataaaattatgatgacaccgtgattctggtaatcagttaagtggggtgtggggccaaaaaggtatataggagttagcaacagctgggattggagaaaca |
417 |
Q |
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| T |
34431505 |
gataaaattatgatgacaccgtgattctgttaaacaattaagtggggtgtggggccaaaaaggtatataggagttagcaacagctgggattggagaaaca |
34431406 |
T |
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| Q |
418 |
aatgtacatgatg |
430 |
Q |
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| T |
34431405 |
aatgtacatgatg |
34431393 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 43402649 - 43402602
Alignment:
| Q |
188 |
tcatcagagtattgcttgtttctatatgcttggaaggttgaatgaaaa |
235 |
Q |
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| T |
43402649 |
tcatcagagttttgcttgtttctttatgcttggaaggttgaatgaaaa |
43402602 |
T |
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