View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7019_high_9 (Length: 409)
Name: NF7019_high_9
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 43093814 - 43093434
Alignment:
| Q |
15 |
ctgtggtgtcatctgtgtcgattgtgatttgcaacaaggcgttgatgagtacattgcatttcattttcggtaagttcatagttgtttaatagttttttat |
114 |
Q |
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| T |
43093814 |
ctgtggtgtcatctgtgtcgattgtgatttgtaacaaggcgttgatgagtacattgcatttcattttcggtaagttcatagatgtttaatagttttttat |
43093715 |
T |
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| Q |
115 |
ttgcaatttgatatggatggatacttatatgaatattagnnnnnnnnnnnnnnn----ccgtggtgattgttactagcatgtttattccatgtatctgtt |
210 |
Q |
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| T |
43093714 |
ttgtaatttgatatggttggatacttatatgaatatgagtttttttttctttctttttccgtggtgattgttactagcatgtttcttccatgtatctgtt |
43093615 |
T |
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| Q |
211 |
tcttccatgtgacgacatcacattttattaaaacttcaaaattgtatatcctacatagttaaagcttccccatacttgtcttaaatatgtagacgtcaaa |
310 |
Q |
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| T |
43093614 |
tcttccatgtgacgacatcacattttattaaaacttcaaaattctatatcctacatagttaaagcttcctcatacttgtcttaaatatgtagacgtctaa |
43093515 |
T |
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| Q |
311 |
agttttaatggacatcattgaatttctatgcagctacaacattgacaagttggcatcttcttgttacattttgttctcttc |
391 |
Q |
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| T |
43093514 |
agttttaatggacatcattgaatttctatgcagctacaacattgacaagttggcatcttcttgttacattttgttctcttc |
43093434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 43085534 - 43085481
Alignment:
| Q |
338 |
atgcagctacaacattgacaagttggcatcttcttgttacattttgttctcttc |
391 |
Q |
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| T |
43085534 |
atgcagctacaactctgacaagctggcatctacttgtcacattttgttcccttc |
43085481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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