View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7019_low_13 (Length: 377)
Name: NF7019_low_13
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_low_13 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 7128357 - 7128702
Alignment:
| Q |
13 |
aaaatgacataaattaaatgttatcacatgcgtcagtgtcgtgtcggtattaaacattgatgcaagtgggacacgacacacattcgatcaattttcagtg |
112 |
Q |
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| T |
7128357 |
aaaatgacataaattaaatgttatcacatgcgtcagtgtcgtgtcggtattaaacaatgatgcaagtgggacacgacacacattcgatcaattatcagtg |
7128456 |
T |
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| Q |
113 |
ctacaatggctatgattttctgtttgatatgaattatattctctctaaatttgtaaagtttacataaggattgacttcctgttttcttgatgttgtactt |
212 |
Q |
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| T |
7128457 |
ctacaaaggctatgattttctgtttgatatgcattatattctctctaattttttaaagtttacataaggattgacttcctgttttcttgatgttgtactt |
7128556 |
T |
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| Q |
213 |
gtctggtaacatgaaaaactgatattgttcgtgttcatgtaaaaacgaataatttgaatttatgagtctttcattattaatttattttgtgaaataatta |
312 |
Q |
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| T |
7128557 |
gtctggtaacatgaaaaactgatattgttcgtgttcatgtaaaaacgaataatttgaatttatgagtctttcattattaatttattttgtgaaataatta |
7128656 |
T |
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| Q |
313 |
tctaactcagatgtgacgactttggtgattttttgtattgcagata |
358 |
Q |
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| T |
7128657 |
tctaactcagatgtgacgactttggtgattttttgtattgcagata |
7128702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 13164963 - 13165012
Alignment:
| Q |
10 |
aagaaaatgacataaattaaatgttatcacatgcgtcagtgtcgtgtcggt |
60 |
Q |
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| T |
13164963 |
aagaaaatgacataa-ttaaaagtaatcacatgtgtcagtgtcgtgtcggt |
13165012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 13290687 - 13290736
Alignment:
| Q |
10 |
aagaaaatgacataaattaaatgttatcacatgcgtcagtgtcgtgtcggt |
60 |
Q |
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| T |
13290687 |
aagaaaatgacataa-ttaaaagtaatcacatgtgtcagtgtcgtgtcggt |
13290736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 142025 - 141976
Alignment:
| Q |
10 |
aagaaaatgacataaattaaatgttatcacatgcgtcagtgtcgtgtcggt |
60 |
Q |
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| T |
142025 |
aagaaaatgacataa-ttaaaagtaatcacatgtgtcagtgtcgtgtcggt |
141976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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